Hb_002701_040

Information

Type -
Description -
Location Contig2701: 26827-50483
Sequence    

Annotation

kegg
ID cit:102617872
description auxin transport protein BIG-like
nr
ID XP_012088111.1
description PREDICTED: auxin transport protein BIG [Jatropha curcas]
swissprot
ID Q9SRU2
description Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2
trembl
ID A0A061ENC5
description Auxin transport protein (BIG) isoform 2 OS=Theobroma cacao GN=TCM_019010 PE=4 SV=1
Gene Ontology
ID GO:0005829
description auxin transport protein big

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28305: 27935-43044 , PASA_asmbl_28309: 46634-50202 , PASA_asmbl_28310: 47507-47941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_040 0.0 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
2 Hb_001967_030 0.0810759 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
3 Hb_006637_050 0.088959478 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
4 Hb_130192_030 0.0903246882 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
5 Hb_004032_380 0.0909912477 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
6 Hb_000130_040 0.0926068603 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
7 Hb_003906_160 0.0939731949 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
8 Hb_014267_010 0.0956647676 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
9 Hb_012656_030 0.0992134051 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
10 Hb_000318_390 0.1009682547 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
11 Hb_004117_310 0.101177549 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
12 Hb_000890_050 0.1016800524 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
13 Hb_003020_050 0.101733363 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_008775_040 0.1028240698 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
15 Hb_001268_350 0.1028714921 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
16 Hb_073562_010 0.1046420491 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
17 Hb_002188_110 0.105056084 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_000264_320 0.105512824 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
19 Hb_000175_220 0.1068639974 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
20 Hb_003467_020 0.1074150019 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_002701_040 Hb_002701_040 Hb_001967_030 Hb_001967_030 Hb_002701_040--Hb_001967_030 Hb_006637_050 Hb_006637_050 Hb_002701_040--Hb_006637_050 Hb_130192_030 Hb_130192_030 Hb_002701_040--Hb_130192_030 Hb_004032_380 Hb_004032_380 Hb_002701_040--Hb_004032_380 Hb_000130_040 Hb_000130_040 Hb_002701_040--Hb_000130_040 Hb_003906_160 Hb_003906_160 Hb_002701_040--Hb_003906_160 Hb_000540_060 Hb_000540_060 Hb_001967_030--Hb_000540_060 Hb_014267_010 Hb_014267_010 Hb_001967_030--Hb_014267_010 Hb_000960_100 Hb_000960_100 Hb_001967_030--Hb_000960_100 Hb_000890_050 Hb_000890_050 Hb_001967_030--Hb_000890_050 Hb_183963_030 Hb_183963_030 Hb_001967_030--Hb_183963_030 Hb_000321_150 Hb_000321_150 Hb_001967_030--Hb_000321_150 Hb_006637_050--Hb_014267_010 Hb_017987_020 Hb_017987_020 Hb_006637_050--Hb_017987_020 Hb_006637_050--Hb_001967_030 Hb_010417_050 Hb_010417_050 Hb_006637_050--Hb_010417_050 Hb_000028_280 Hb_000028_280 Hb_006637_050--Hb_000028_280 Hb_002740_110 Hb_002740_110 Hb_006637_050--Hb_002740_110 Hb_000318_390 Hb_000318_390 Hb_130192_030--Hb_000318_390 Hb_130192_030--Hb_001967_030 Hb_000928_300 Hb_000928_300 Hb_130192_030--Hb_000928_300 Hb_009851_070 Hb_009851_070 Hb_130192_030--Hb_009851_070 Hb_130192_030--Hb_014267_010 Hb_004032_380--Hb_002740_110 Hb_004143_130 Hb_004143_130 Hb_004032_380--Hb_004143_130 Hb_010174_110 Hb_010174_110 Hb_004032_380--Hb_010174_110 Hb_005901_020 Hb_005901_020 Hb_004032_380--Hb_005901_020 Hb_003253_040 Hb_003253_040 Hb_004032_380--Hb_003253_040 Hb_004032_380--Hb_000028_280 Hb_006831_040 Hb_006831_040 Hb_000130_040--Hb_006831_040 Hb_000130_040--Hb_010174_110 Hb_000130_040--Hb_004032_380 Hb_000130_040--Hb_002740_110 Hb_002053_080 Hb_002053_080 Hb_000130_040--Hb_002053_080 Hb_000599_190 Hb_000599_190 Hb_003906_160--Hb_000599_190 Hb_000260_070 Hb_000260_070 Hb_003906_160--Hb_000260_070 Hb_000107_420 Hb_000107_420 Hb_003906_160--Hb_000107_420 Hb_002780_010 Hb_002780_010 Hb_003906_160--Hb_002780_010 Hb_001217_050 Hb_001217_050 Hb_003906_160--Hb_001217_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.884 41.836 4.66525 11.9917 30.6308 28.0296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4633 20.0507 32.308 27.0406 21.3995

CAGE analysis