Hb_002701_050

Information

Type -
Description -
Location Contig2701: 53493-56422
Sequence    

Annotation

kegg
ID rcu:RCOM_0790710
description 60S ribosomal protein L7a, putative
nr
ID XP_012091869.1
description PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
swissprot
ID P35685
description 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1
trembl
ID A0A067JMF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21646 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l7a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28311: 53524-56424
cDNA
(Sanger)
(ID:Location)		 046_F21.ab1: 53929-56423 , 047_H08.ab1: 53914-56424

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_050 0.0 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
2 Hb_004007_100 0.0564068248 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
3 Hb_000199_070 0.0754938957 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015175_030 0.0847196303 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
5 Hb_001242_110 0.0869281263 - - 40S ribosomal protein S18, putative [Ricinus communis]
6 Hb_000526_040 0.087926749 - - 60S ribosomal protein L6, putative [Ricinus communis]
7 Hb_148209_080 0.0899502057 - - MED32, putative [Theobroma cacao]
8 Hb_130291_010 0.0915962247 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
9 Hb_000815_260 0.0916597914 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
10 Hb_009554_010 0.0927008921 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
11 Hb_000227_230 0.0930928081 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
12 Hb_000580_080 0.0940680069 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
13 Hb_008173_120 0.0945562294 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004032_100 0.095598141 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
15 Hb_000751_130 0.0970910237 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
16 Hb_000380_190 0.0970965157 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_003058_220 0.0976483678 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
18 Hb_000184_050 0.0982721358 - - NOI, putative [Ricinus communis]
19 Hb_001155_030 0.0986304951 - - 60S ribosomal protein L10A [Hevea brasiliensis]
20 Hb_000274_020 0.0990616421 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002701_050 Hb_002701_050 Hb_004007_100 Hb_004007_100 Hb_002701_050--Hb_004007_100 Hb_000199_070 Hb_000199_070 Hb_002701_050--Hb_000199_070 Hb_015175_030 Hb_015175_030 Hb_002701_050--Hb_015175_030 Hb_001242_110 Hb_001242_110 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_148209_080 Hb_148209_080 Hb_002701_050--Hb_148209_080 Hb_008173_120 Hb_008173_120 Hb_004007_100--Hb_008173_120 Hb_004007_100--Hb_148209_080 Hb_000684_230 Hb_000684_230 Hb_004007_100--Hb_000684_230 Hb_004007_100--Hb_001242_110 Hb_031042_010 Hb_031042_010 Hb_004007_100--Hb_031042_010 Hb_003058_220 Hb_003058_220 Hb_000199_070--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090 Hb_004032_100 Hb_004032_100 Hb_015175_030--Hb_004032_100 Hb_000283_110 Hb_000283_110 Hb_015175_030--Hb_000283_110 Hb_001505_020 Hb_001505_020 Hb_015175_030--Hb_001505_020 Hb_001998_050 Hb_001998_050 Hb_015175_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_015175_030--Hb_000227_230 Hb_000274_020 Hb_000274_020 Hb_015175_030--Hb_000274_020 Hb_001242_110--Hb_148209_080 Hb_000028_140 Hb_000028_140 Hb_001242_110--Hb_000028_140 Hb_003996_020 Hb_003996_020 Hb_001242_110--Hb_003996_020 Hb_001242_110--Hb_000227_230 Hb_001242_110--Hb_015175_030 Hb_027073_040 Hb_027073_040 Hb_001242_110--Hb_027073_040 Hb_005496_030 Hb_005496_030 Hb_000526_040--Hb_005496_030 Hb_000545_150 Hb_000545_150 Hb_000526_040--Hb_000545_150 Hb_001247_350 Hb_001247_350 Hb_000526_040--Hb_001247_350 Hb_001638_260 Hb_001638_260 Hb_000526_040--Hb_001638_260 Hb_012573_070 Hb_012573_070 Hb_000526_040--Hb_012573_070 Hb_002660_030 Hb_002660_030 Hb_000526_040--Hb_002660_030 Hb_000340_140 Hb_000340_140 Hb_148209_080--Hb_000340_140 Hb_000230_540 Hb_000230_540 Hb_148209_080--Hb_000230_540 Hb_148209_080--Hb_004032_100 Hb_000751_130 Hb_000751_130 Hb_148209_080--Hb_000751_130 Hb_148209_080--Hb_015175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.463 80.7099 54.9226 111.711 129.59 396.306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
300.909 559.109 263.073 144.724 39.8745

CAGE analysis