Hb_002701_060

Information

Type -
Description -
Location Contig2701: 60391-62219
Sequence    

Annotation

kegg
ID rcu:RCOM_0790500
description hypothetical protein
nr
ID XP_002525926.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIV7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0790500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28312: 60415-62222
cDNA
(Sanger)
(ID:Location)		 011_K16.ab1: 61209-62090 , 016_O20.ab1: 61239-62090 , 017_N23.ab1: 61286-62092 , 019_N15.ab1: 61307-62097 , 022_P13.ab1: 60475-60894 , 031_G14.ab1: 61413-62095 , 044_L22.ab1: 61302-62090 , 044_P18.ab1: 61224-62090

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006053_020 0.0734340107 - - CAP [Theobroma cacao]
3 Hb_002701_170 0.0815566338 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
4 Hb_000072_110 0.0848655768 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
5 Hb_000574_010 0.089198264 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
6 Hb_006970_120 0.0918989714 - - conserved hypothetical protein [Ricinus communis]
7 Hb_039435_020 0.1065891161 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
8 Hb_004324_320 0.1171126847 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
9 Hb_000147_020 0.1188722129 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
10 Hb_024570_030 0.1207222217 - - cytochrome P450, putative [Ricinus communis]
11 Hb_170023_010 0.1217626215 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
12 Hb_006789_020 0.122489477 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
13 Hb_010678_010 0.1260013578 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
14 Hb_002122_070 0.12825405 - - unnamed protein product [Vitis vinifera]
15 Hb_067558_010 0.1300405318 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_000380_140 0.1306801934 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
17 Hb_000365_440 0.1310847224 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
18 Hb_000164_110 0.1315653333 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
19 Hb_023732_080 0.1360295992 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
20 Hb_000560_060 0.1392917317 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002701_060 Hb_002701_060 Hb_006053_020 Hb_006053_020 Hb_002701_060--Hb_006053_020 Hb_002701_170 Hb_002701_170 Hb_002701_060--Hb_002701_170 Hb_000072_110 Hb_000072_110 Hb_002701_060--Hb_000072_110 Hb_000574_010 Hb_000574_010 Hb_002701_060--Hb_000574_010 Hb_006970_120 Hb_006970_120 Hb_002701_060--Hb_006970_120 Hb_039435_020 Hb_039435_020 Hb_002701_060--Hb_039435_020 Hb_006053_020--Hb_039435_020 Hb_002122_070 Hb_002122_070 Hb_006053_020--Hb_002122_070 Hb_006053_020--Hb_006970_120 Hb_067558_010 Hb_067558_010 Hb_006053_020--Hb_067558_010 Hb_006053_020--Hb_000072_110 Hb_000560_060 Hb_000560_060 Hb_002701_170--Hb_000560_060 Hb_006789_020 Hb_006789_020 Hb_002701_170--Hb_006789_020 Hb_010678_010 Hb_010678_010 Hb_002701_170--Hb_010678_010 Hb_002701_170--Hb_000072_110 Hb_002151_150 Hb_002151_150 Hb_002701_170--Hb_002151_150 Hb_004324_320 Hb_004324_320 Hb_000072_110--Hb_004324_320 Hb_170023_010 Hb_170023_010 Hb_000072_110--Hb_170023_010 Hb_000072_110--Hb_006970_120 Hb_008143_010 Hb_008143_010 Hb_000574_010--Hb_008143_010 Hb_005575_010 Hb_005575_010 Hb_000574_010--Hb_005575_010 Hb_000574_010--Hb_010678_010 Hb_000574_010--Hb_006053_020 Hb_015978_090 Hb_015978_090 Hb_000574_010--Hb_015978_090 Hb_000380_140 Hb_000380_140 Hb_006970_120--Hb_000380_140 Hb_000164_110 Hb_000164_110 Hb_006970_120--Hb_000164_110 Hb_000147_020 Hb_000147_020 Hb_006970_120--Hb_000147_020 Hb_004946_010 Hb_004946_010 Hb_006970_120--Hb_004946_010 Hb_039435_020--Hb_002122_070 Hb_114893_010 Hb_114893_010 Hb_039435_020--Hb_114893_010 Hb_001300_240 Hb_001300_240 Hb_039435_020--Hb_001300_240 Hb_185474_020 Hb_185474_020 Hb_039435_020--Hb_185474_020 Hb_010311_020 Hb_010311_020 Hb_039435_020--Hb_010311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203531 58.3501 675.998 234.845 0.626614 0.230063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0269121 0 0.0399654 451.239 1051.35

CAGE analysis