Hb_002701_080

Information

Type -
Description -
Location Contig2701: 73536-77013
Sequence    

Annotation

kegg
ID rcu:RCOM_0790270
description 60S ribosomal protein L7a, putative
nr
ID XP_012088075.1
description PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
swissprot
ID Q8LE94
description E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1
trembl
ID A0A067JND7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25599 PE=4 SV=1
Gene Ontology
ID GO:0005840
description e3 ubiquitin-protein ligase at3g02290-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28317: 72606-72714 , PASA_asmbl_28318: 72853-73254 , PASA_asmbl_28319: 73635-78846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_080 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
2 Hb_011612_010 0.0590038305 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
3 Hb_000398_190 0.0647507258 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
4 Hb_012654_010 0.0702198581 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
5 Hb_001504_160 0.0789457464 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
6 Hb_009620_040 0.0811178826 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
7 Hb_000230_330 0.0891996157 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
8 Hb_000160_040 0.0933471805 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
9 Hb_002601_120 0.0947513327 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
10 Hb_000139_250 0.0957921618 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
11 Hb_012193_010 0.0966593156 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_001140_250 0.0968285611 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
13 Hb_000076_080 0.0969012576 - - PREDICTED: protein MOS2 [Jatropha curcas]
14 Hb_004567_100 0.0969553734 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
15 Hb_001019_170 0.0978237606 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
16 Hb_004221_050 0.0988782183 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
17 Hb_005214_160 0.0990386345 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
18 Hb_000173_510 0.1011614674 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
19 Hb_002725_070 0.1016558638 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
20 Hb_004162_280 0.1019343074 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002701_080 Hb_002701_080 Hb_011612_010 Hb_011612_010 Hb_002701_080--Hb_011612_010 Hb_000398_190 Hb_000398_190 Hb_002701_080--Hb_000398_190 Hb_012654_010 Hb_012654_010 Hb_002701_080--Hb_012654_010 Hb_001504_160 Hb_001504_160 Hb_002701_080--Hb_001504_160 Hb_009620_040 Hb_009620_040 Hb_002701_080--Hb_009620_040 Hb_000230_330 Hb_000230_330 Hb_002701_080--Hb_000230_330 Hb_011612_010--Hb_000398_190 Hb_011612_010--Hb_001504_160 Hb_011612_010--Hb_012654_010 Hb_012193_010 Hb_012193_010 Hb_011612_010--Hb_012193_010 Hb_004162_280 Hb_004162_280 Hb_011612_010--Hb_004162_280 Hb_000398_190--Hb_001504_160 Hb_000398_190--Hb_012654_010 Hb_000398_190--Hb_000230_330 Hb_000041_220 Hb_000041_220 Hb_000398_190--Hb_000041_220 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_002097_090 Hb_002097_090 Hb_009620_040--Hb_002097_090 Hb_000160_040 Hb_000160_040 Hb_009620_040--Hb_000160_040 Hb_000236_370 Hb_000236_370 Hb_009620_040--Hb_000236_370 Hb_004934_090 Hb_004934_090 Hb_009620_040--Hb_004934_090 Hb_000173_510 Hb_000173_510 Hb_009620_040--Hb_000173_510 Hb_000645_150 Hb_000645_150 Hb_009620_040--Hb_000645_150 Hb_001584_110 Hb_001584_110 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000230_330--Hb_000076_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4444 10.3156 3.86531 6.94055 27.0817 24.1453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.15 9.63509 11.5995 11.1621 2.20293

CAGE analysis