Hb_002701_120

Information

Type -
Description -
Location Contig2701: 111111-112978
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13380g
description hypothetical protein
nr
ID XP_012088063.1
description PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JK01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25592 PE=4 SV=1
Gene Ontology
ID GO:0016021
description chaperone 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28328: 112207-112634 , PASA_asmbl_28329: 111111-112825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_120 0.0 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
2 Hb_005527_010 0.1268283076 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000694_030 0.1284386923 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
4 Hb_006618_070 0.1453799727 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
5 Hb_011310_140 0.165622597 - - hypothetical protein JCGZ_07173 [Jatropha curcas]
6 Hb_000284_130 0.1656908359 - - sodium-bile acid cotransporter, putative [Ricinus communis]
7 Hb_005038_030 0.1673370203 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
8 Hb_005276_130 0.1679179944 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001352_080 0.1698266136 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
10 Hb_002596_030 0.1728089292 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
11 Hb_006555_040 0.1738066504 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
12 Hb_158092_030 0.1752791801 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
13 Hb_000260_430 0.177978549 - - ribosomal protein L17, putative [Ricinus communis]
14 Hb_066967_020 0.1797198098 - - RAB6-interacting protein, putative [Ricinus communis]
15 Hb_001959_240 0.1806813127 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000140_440 0.1813711762 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
17 Hb_032202_180 0.181686753 - - PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]
18 Hb_002997_070 0.1819826114 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
19 Hb_010367_030 0.1838456113 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000181_060 0.1840226292 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002701_120 Hb_002701_120 Hb_005527_010 Hb_005527_010 Hb_002701_120--Hb_005527_010 Hb_000694_030 Hb_000694_030 Hb_002701_120--Hb_000694_030 Hb_006618_070 Hb_006618_070 Hb_002701_120--Hb_006618_070 Hb_011310_140 Hb_011310_140 Hb_002701_120--Hb_011310_140 Hb_000284_130 Hb_000284_130 Hb_002701_120--Hb_000284_130 Hb_005038_030 Hb_005038_030 Hb_002701_120--Hb_005038_030 Hb_000061_150 Hb_000061_150 Hb_005527_010--Hb_000061_150 Hb_005527_010--Hb_000694_030 Hb_005527_010--Hb_011310_140 Hb_005276_130 Hb_005276_130 Hb_005527_010--Hb_005276_130 Hb_066967_020 Hb_066967_020 Hb_005527_010--Hb_066967_020 Hb_000694_030--Hb_066967_020 Hb_000694_030--Hb_006618_070 Hb_001959_240 Hb_001959_240 Hb_000694_030--Hb_001959_240 Hb_029142_030 Hb_029142_030 Hb_000694_030--Hb_029142_030 Hb_002498_170 Hb_002498_170 Hb_006618_070--Hb_002498_170 Hb_000140_440 Hb_000140_440 Hb_006618_070--Hb_000140_440 Hb_002249_040 Hb_002249_040 Hb_006618_070--Hb_002249_040 Hb_000211_040 Hb_000211_040 Hb_006618_070--Hb_000211_040 Hb_006618_070--Hb_001959_240 Hb_006555_040 Hb_006555_040 Hb_006618_070--Hb_006555_040 Hb_000976_190 Hb_000976_190 Hb_011310_140--Hb_000976_190 Hb_003304_030 Hb_003304_030 Hb_011310_140--Hb_003304_030 Hb_006787_090 Hb_006787_090 Hb_011310_140--Hb_006787_090 Hb_002997_070 Hb_002997_070 Hb_011310_140--Hb_002997_070 Hb_000194_010 Hb_000194_010 Hb_011310_140--Hb_000194_010 Hb_021650_010 Hb_021650_010 Hb_011310_140--Hb_021650_010 Hb_000284_130--Hb_006787_090 Hb_021732_010 Hb_021732_010 Hb_000284_130--Hb_021732_010 Hb_004994_080 Hb_004994_080 Hb_000284_130--Hb_004994_080 Hb_000181_060 Hb_000181_060 Hb_000284_130--Hb_000181_060 Hb_000364_100 Hb_000364_100 Hb_000284_130--Hb_000364_100 Hb_003752_070 Hb_003752_070 Hb_000284_130--Hb_003752_070 Hb_001352_080 Hb_001352_080 Hb_005038_030--Hb_001352_080 Hb_001907_070 Hb_001907_070 Hb_005038_030--Hb_001907_070 Hb_004846_050 Hb_004846_050 Hb_005038_030--Hb_004846_050 Hb_005618_150 Hb_005618_150 Hb_005038_030--Hb_005618_150 Hb_006911_070 Hb_006911_070 Hb_005038_030--Hb_006911_070 Hb_002016_010 Hb_002016_010 Hb_005038_030--Hb_002016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.478 11.9974 197.549 27.2131 60.2989 38.7614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.564 20.4457 13.4455 8.78581 109.093

CAGE analysis