Hb_002701_130

Information

Type transcription factor
Description TF Family: MYB
Location Contig2701: 113862-114874
Sequence    

Annotation

kegg
ID tcc:TCM_018971
description Myb domain protein 121
nr
ID XP_007032859.1
description Myb domain protein 121 [Theobroma cacao]
swissprot
ID Q4JL84
description Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2
trembl
ID A0A061EFJ9
description Myb domain protein 121 OS=Theobroma cacao GN=TCM_018971 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_130 0.0 transcription factor TF Family: MYB Myb domain protein 121 [Theobroma cacao]
2 Hb_001628_110 0.1218835692 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
3 Hb_003507_020 0.1533008121 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
4 Hb_000329_610 0.1560491488 - - conserved hypothetical protein [Ricinus communis]
5 Hb_050964_020 0.1566040993 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
6 Hb_000853_370 0.1641945262 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
7 Hb_043637_010 0.164684167 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
8 Hb_006557_010 0.1708627078 - - -
9 Hb_010368_070 0.1743012523 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005410_010 0.1784320111 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
11 Hb_027556_010 0.1785457996 - - -
12 Hb_001252_160 0.1789588519 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
13 Hb_000958_010 0.1809473236 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004032_240 0.1813490011 - - electron transporter, putative [Ricinus communis]
15 Hb_064201_010 0.1814886113 - - hypothetical protein RCOM_1685970 [Ricinus communis]
16 Hb_005057_010 0.1814892415 - - -
17 Hb_001115_050 0.1827206801 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_000317_080 0.1882403304 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
19 Hb_002172_030 0.1911121705 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
20 Hb_012654_020 0.1912484998 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002701_130 Hb_002701_130 Hb_001628_110 Hb_001628_110 Hb_002701_130--Hb_001628_110 Hb_003507_020 Hb_003507_020 Hb_002701_130--Hb_003507_020 Hb_000329_610 Hb_000329_610 Hb_002701_130--Hb_000329_610 Hb_050964_020 Hb_050964_020 Hb_002701_130--Hb_050964_020 Hb_000853_370 Hb_000853_370 Hb_002701_130--Hb_000853_370 Hb_043637_010 Hb_043637_010 Hb_002701_130--Hb_043637_010 Hb_002078_040 Hb_002078_040 Hb_001628_110--Hb_002078_040 Hb_002172_030 Hb_002172_030 Hb_001628_110--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_001628_110--Hb_154381_050 Hb_005410_010 Hb_005410_010 Hb_001628_110--Hb_005410_010 Hb_001628_110--Hb_043637_010 Hb_001628_110--Hb_003507_020 Hb_003507_020--Hb_043637_010 Hb_000603_200 Hb_000603_200 Hb_003507_020--Hb_000603_200 Hb_001252_160 Hb_001252_160 Hb_003507_020--Hb_001252_160 Hb_003627_020 Hb_003627_020 Hb_003507_020--Hb_003627_020 Hb_003507_020--Hb_000853_370 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040 Hb_003786_110 Hb_003786_110 Hb_000329_610--Hb_003786_110 Hb_017134_040 Hb_017134_040 Hb_000329_610--Hb_017134_040 Hb_000329_610--Hb_000853_370 Hb_001504_170 Hb_001504_170 Hb_000329_610--Hb_001504_170 Hb_180992_010 Hb_180992_010 Hb_000329_610--Hb_180992_010 Hb_000329_610--Hb_003507_020 Hb_050964_020--Hb_005410_010 Hb_050964_020--Hb_000853_370 Hb_050964_020--Hb_003507_020 Hb_002405_020 Hb_002405_020 Hb_050964_020--Hb_002405_020 Hb_002149_040 Hb_002149_040 Hb_050964_020--Hb_002149_040 Hb_050964_020--Hb_001628_110 Hb_000853_370--Hb_003627_020 Hb_014067_010 Hb_014067_010 Hb_000853_370--Hb_014067_010 Hb_007178_010 Hb_007178_010 Hb_000853_370--Hb_007178_010 Hb_000853_370--Hb_154381_050 Hb_170116_010 Hb_170116_010 Hb_043637_010--Hb_170116_010 Hb_043637_010--Hb_007810_040 Hb_043637_010--Hb_000603_200 Hb_003304_080 Hb_003304_080 Hb_043637_010--Hb_003304_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.37015 0.331333 0 0.106371 10.4724 4.79127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92473 4.43206 1.65995 0.262653 0

CAGE analysis