Hb_002701_140

Information

Type transcription factor
Description TF Family: GRAS
Location Contig2701: 128857-130110
Sequence    

Annotation

kegg
ID rcu:RCOM_0789650
description DELLA protein SLR1, putative
nr
ID XP_012088061.1
description PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
swissprot
ID Q9LPR8
description Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1
trembl
ID B9SIU3
description DELLA protein SLR1, putative OS=Ricinus communis GN=RCOM_0789650 PE=4 SV=1
Gene Ontology
ID GO:0005634
description scarecrow-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_140 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
2 Hb_004161_010 0.0955416807 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
3 Hb_000277_020 0.1077465943 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
4 Hb_000940_020 0.1246935182 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
5 Hb_000825_040 0.1360744056 - - catalytic, putative [Ricinus communis]
6 Hb_003847_140 0.1396891194 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
7 Hb_000656_360 0.14390689 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
8 Hb_006351_080 0.147142688 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
9 Hb_004586_380 0.1480912567 - - purine transporter, putative [Ricinus communis]
10 Hb_029866_140 0.1524449491 - - PREDICTED: hevamine-A [Jatropha curcas]
11 Hb_000627_140 0.1530014718 - - ATP binding protein, putative [Ricinus communis]
12 Hb_119441_010 0.1561911743 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
13 Hb_001331_050 0.1581148715 - - hypothetical protein VITISV_022439 [Vitis vinifera]
14 Hb_176149_010 0.1581230936 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
15 Hb_004656_030 0.1581741433 - - putative pectin methylesterase family protein [Populus trichocarpa]
16 Hb_001749_020 0.1584623055 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
17 Hb_001437_200 0.1585974415 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
18 Hb_005643_010 0.1593518628 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
19 Hb_000369_150 0.1608307843 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
20 Hb_124302_030 0.1660753665 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_002701_140 Hb_002701_140 Hb_004161_010 Hb_004161_010 Hb_002701_140--Hb_004161_010 Hb_000277_020 Hb_000277_020 Hb_002701_140--Hb_000277_020 Hb_000940_020 Hb_000940_020 Hb_002701_140--Hb_000940_020 Hb_000825_040 Hb_000825_040 Hb_002701_140--Hb_000825_040 Hb_003847_140 Hb_003847_140 Hb_002701_140--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_002701_140--Hb_000656_360 Hb_001437_200 Hb_001437_200 Hb_004161_010--Hb_001437_200 Hb_004656_030 Hb_004656_030 Hb_004161_010--Hb_004656_030 Hb_027913_010 Hb_027913_010 Hb_004161_010--Hb_027913_010 Hb_004161_010--Hb_000656_360 Hb_004161_010--Hb_003847_140 Hb_005643_010 Hb_005643_010 Hb_000277_020--Hb_005643_010 Hb_001331_050 Hb_001331_050 Hb_000277_020--Hb_001331_050 Hb_000277_020--Hb_003847_140 Hb_000035_360 Hb_000035_360 Hb_000277_020--Hb_000035_360 Hb_011924_030 Hb_011924_030 Hb_000277_020--Hb_011924_030 Hb_000345_190 Hb_000345_190 Hb_000940_020--Hb_000345_190 Hb_001810_010 Hb_001810_010 Hb_000940_020--Hb_001810_010 Hb_004586_380 Hb_004586_380 Hb_000940_020--Hb_004586_380 Hb_029866_140 Hb_029866_140 Hb_000940_020--Hb_029866_140 Hb_006351_080 Hb_006351_080 Hb_000940_020--Hb_006351_080 Hb_000825_040--Hb_000277_020 Hb_000825_040--Hb_006351_080 Hb_119441_010 Hb_119441_010 Hb_000825_040--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000825_040--Hb_000369_150 Hb_000825_040--Hb_000940_020 Hb_003847_140--Hb_000656_360 Hb_066262_010 Hb_066262_010 Hb_003847_140--Hb_066262_010 Hb_008707_020 Hb_008707_020 Hb_003847_140--Hb_008707_020 Hb_005081_060 Hb_005081_060 Hb_003847_140--Hb_005081_060 Hb_003847_140--Hb_011924_030 Hb_003847_140--Hb_029866_140 Hb_000656_360--Hb_029866_140 Hb_176149_010 Hb_176149_010 Hb_000656_360--Hb_176149_010 Hb_000656_360--Hb_066262_010 Hb_000656_360--Hb_119441_010 Hb_000656_360--Hb_000369_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03414 0.0132838 0.0785075 0.0157995 0.0323235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.133339 0

CAGE analysis