Hb_002701_160

Information

Type -
Description -
Location Contig2701: 152637-155124
Sequence    

Annotation

kegg
ID pop:POPTR_0004s11700g
description POPTRDRAFT_712863; type IIIa membrane protein cp-wap13
nr
ID XP_012088058.1
description PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
swissprot
ID Q9SRT9
description UDP-arabinopyranose mutase 1 OS=Arabidopsis thaliana GN=RGP1 PE=1 SV=1
trembl
ID A0A067JK93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25588 PE=4 SV=1
Gene Ontology
ID GO:0016866
description alpha- -glucan-protein synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28335: 152572-155134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_160 0.0 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
2 Hb_003659_010 0.1372485269 - - aldo/keto reductase AKR [Manihot esculenta]
3 Hb_005545_020 0.1604106534 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
4 Hb_130498_010 0.1719607873 - - Laccase 17 [Theobroma cacao]
5 Hb_001300_170 0.1730390805 - - conserved hypothetical protein [Ricinus communis]
6 Hb_013726_010 0.1747643482 - - ATP binding protein, putative [Ricinus communis]
7 Hb_003299_020 0.1796329474 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
8 Hb_023278_030 0.1826996152 - - zinc finger protein, putative [Ricinus communis]
9 Hb_002518_090 0.1898785746 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
10 Hb_001195_220 0.1907657293 - - sugar transporter, putative [Ricinus communis]
11 Hb_027380_190 0.1931940795 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
12 Hb_000340_350 0.19355486 - - PREDICTED: sugar transporter ERD6-like 7 isoform X1 [Jatropha curcas]
13 Hb_001022_050 0.1946634525 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
14 Hb_000529_040 0.1970274618 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
15 Hb_000005_340 0.198326726 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
16 Hb_007002_040 0.1995657387 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
17 Hb_000007_430 0.1996489385 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
18 Hb_000406_030 0.199760879 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
19 Hb_000042_380 0.2006002949 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
20 Hb_002627_020 0.2009260663 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]

Gene co-expression network

sample Hb_002701_160 Hb_002701_160 Hb_003659_010 Hb_003659_010 Hb_002701_160--Hb_003659_010 Hb_005545_020 Hb_005545_020 Hb_002701_160--Hb_005545_020 Hb_130498_010 Hb_130498_010 Hb_002701_160--Hb_130498_010 Hb_001300_170 Hb_001300_170 Hb_002701_160--Hb_001300_170 Hb_013726_010 Hb_013726_010 Hb_002701_160--Hb_013726_010 Hb_003299_020 Hb_003299_020 Hb_002701_160--Hb_003299_020 Hb_001195_220 Hb_001195_220 Hb_003659_010--Hb_001195_220 Hb_007576_140 Hb_007576_140 Hb_003659_010--Hb_007576_140 Hb_001240_050 Hb_001240_050 Hb_003659_010--Hb_001240_050 Hb_000679_110 Hb_000679_110 Hb_003659_010--Hb_000679_110 Hb_002235_050 Hb_002235_050 Hb_003659_010--Hb_002235_050 Hb_005545_020--Hb_003299_020 Hb_000042_380 Hb_000042_380 Hb_005545_020--Hb_000042_380 Hb_000753_110 Hb_000753_110 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_004883_020 Hb_004883_020 Hb_005545_020--Hb_004883_020 Hb_007575_030 Hb_007575_030 Hb_005545_020--Hb_007575_030 Hb_130498_010--Hb_003659_010 Hb_000340_350 Hb_000340_350 Hb_130498_010--Hb_000340_350 Hb_000152_770 Hb_000152_770 Hb_130498_010--Hb_000152_770 Hb_004551_050 Hb_004551_050 Hb_130498_010--Hb_004551_050 Hb_130498_010--Hb_007576_140 Hb_000005_340 Hb_000005_340 Hb_001300_170--Hb_000005_340 Hb_000594_070 Hb_000594_070 Hb_001300_170--Hb_000594_070 Hb_000984_260 Hb_000984_260 Hb_001300_170--Hb_000984_260 Hb_000092_120 Hb_000092_120 Hb_001300_170--Hb_000092_120 Hb_002960_090 Hb_002960_090 Hb_001300_170--Hb_002960_090 Hb_000032_250 Hb_000032_250 Hb_013726_010--Hb_000032_250 Hb_004545_070 Hb_004545_070 Hb_013726_010--Hb_004545_070 Hb_002072_040 Hb_002072_040 Hb_013726_010--Hb_002072_040 Hb_001675_170 Hb_001675_170 Hb_013726_010--Hb_001675_170 Hb_008143_060 Hb_008143_060 Hb_013726_010--Hb_008143_060 Hb_008695_150 Hb_008695_150 Hb_013726_010--Hb_008695_150 Hb_003299_020--Hb_000753_110 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_001377_530 Hb_001377_530 Hb_003299_020--Hb_001377_530 Hb_000009_420 Hb_000009_420 Hb_003299_020--Hb_000009_420 Hb_003398_040 Hb_003398_040 Hb_003299_020--Hb_003398_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.985266 8.48422 49.8997 24.2802 0.168577 0.425191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.85928 10.213 5.50276 42.6556 12.3084

CAGE analysis