Hb_002701_210

Information

Type -
Description -
Location Contig2701: 193023-197357
Sequence    

Annotation

kegg
ID rcu:RCOM_0917640
description Protein COBRA precursor, putative
nr
ID XP_002531000.1
description Protein COBRA precursor, putative [Ricinus communis]
swissprot
ID Q94KT8
description Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1
trembl
ID B9SYD1
description Protein COBRA, putative OS=Ricinus communis GN=RCOM_0917640 PE=4 SV=1
Gene Ontology
ID GO:0009505
description protein cobra

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28341: 193050-197286 , PASA_asmbl_28342: 193050-194993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_210 0.0 - - Protein COBRA precursor, putative [Ricinus communis]
2 Hb_000186_200 0.0723956235 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
3 Hb_003078_030 0.103241223 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
4 Hb_000084_240 0.1033939111 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
5 Hb_000163_230 0.1126858368 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
6 Hb_000045_260 0.1128887991 - - protein with unknown function [Ricinus communis]
7 Hb_004108_240 0.1133500241 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
8 Hb_055488_020 0.1142192942 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
9 Hb_001437_010 0.1213898689 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
10 Hb_091226_010 0.1221616276 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
11 Hb_003224_030 0.1238191895 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
12 Hb_002685_200 0.1252792393 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
13 Hb_001009_090 0.1284398895 - - CDK protein [Hevea brasiliensis]
14 Hb_007007_080 0.1293267041 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000749_070 0.1294016514 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
16 Hb_090782_010 0.1310268399 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
17 Hb_005499_010 0.1317122673 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
18 Hb_006711_070 0.134761989 - - hypothetical protein RCOM_1336320 [Ricinus communis]
19 Hb_003077_050 0.137689593 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
20 Hb_000608_280 0.1404578699 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002701_210 Hb_002701_210 Hb_000186_200 Hb_000186_200 Hb_002701_210--Hb_000186_200 Hb_003078_030 Hb_003078_030 Hb_002701_210--Hb_003078_030 Hb_000084_240 Hb_000084_240 Hb_002701_210--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_002701_210--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_002701_210--Hb_000045_260 Hb_004108_240 Hb_004108_240 Hb_002701_210--Hb_004108_240 Hb_000186_200--Hb_000084_240 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000186_200--Hb_000045_260 Hb_000186_200--Hb_000163_230 Hb_000056_300 Hb_000056_300 Hb_003078_030--Hb_000056_300 Hb_003078_030--Hb_000163_230 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_000836_370 Hb_000836_370 Hb_003078_030--Hb_000836_370 Hb_005499_010 Hb_005499_010 Hb_000084_240--Hb_005499_010 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_000163_230--Hb_001009_090 Hb_000163_230--Hb_000045_260 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000045_260--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_000045_260--Hb_000638_280 Hb_000045_260--Hb_000454_140 Hb_000045_260--Hb_002897_050 Hb_124677_040 Hb_124677_040 Hb_004108_240--Hb_124677_040 Hb_004108_240--Hb_000045_260 Hb_003925_040 Hb_003925_040 Hb_004108_240--Hb_003925_040 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_004108_240--Hb_003147_060 Hb_004774_020 Hb_004774_020 Hb_004108_240--Hb_004774_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7517 100.927 45.8086 39.6506 15.7425 8.01975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1421 13.3448 12.5858 10.4098 9.7052

CAGE analysis