Hb_002702_010

Information

Type -
Description -
Location Contig2702: 17323-19347
Sequence    

Annotation

kegg
ID rcu:RCOM_0072320
description carbohydrate binding protein, putative (EC:2.7.11.22)
nr
ID XP_002531545.1
description carbohydrate binding protein, putative [Ricinus communis]
swissprot
ID Q9SZD5
description L-type lectin-domain containing receptor kinase V.9 OS=Arabidopsis thaliana GN=LECRK59 PE=2 SV=1
trembl
ID B9SZX6
description Carbohydrate binding protein, putative OS=Ricinus communis GN=RCOM_0072320 PE=3 SV=1
Gene Ontology
ID GO:0005886
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28361: 19218-19324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002702_010 0.0 - - carbohydrate binding protein, putative [Ricinus communis]
2 Hb_012395_090 0.050121799 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
3 Hb_011013_040 0.0653746633 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
4 Hb_004223_150 0.0786980388 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
5 Hb_000046_120 0.0789823016 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
6 Hb_001942_010 0.0796091232 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
7 Hb_003371_080 0.0801611198 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
8 Hb_003435_030 0.0818642835 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_001266_010 0.0843460355 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
10 Hb_000155_020 0.0844329776 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000020_090 0.0846396864 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
12 Hb_010136_010 0.0903251196 - - Putative receptor-like protein kinase [Glycine soja]
13 Hb_001750_020 0.0909420586 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
14 Hb_005337_100 0.0915032906 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
15 Hb_060253_010 0.0952387349 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
16 Hb_004635_120 0.0961411411 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
17 Hb_000152_350 0.097777706 - - PREDICTED: enolase [Jatropha curcas]
18 Hb_029695_090 0.0980619631 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
19 Hb_000881_020 0.0986483799 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
20 Hb_000156_110 0.0992721699 - - Uncharacterized protein TCM_029490 [Theobroma cacao]

Gene co-expression network

sample Hb_002702_010 Hb_002702_010 Hb_012395_090 Hb_012395_090 Hb_002702_010--Hb_012395_090 Hb_011013_040 Hb_011013_040 Hb_002702_010--Hb_011013_040 Hb_004223_150 Hb_004223_150 Hb_002702_010--Hb_004223_150 Hb_000046_120 Hb_000046_120 Hb_002702_010--Hb_000046_120 Hb_001942_010 Hb_001942_010 Hb_002702_010--Hb_001942_010 Hb_003371_080 Hb_003371_080 Hb_002702_010--Hb_003371_080 Hb_012395_090--Hb_011013_040 Hb_000155_020 Hb_000155_020 Hb_012395_090--Hb_000155_020 Hb_012395_090--Hb_001942_010 Hb_012395_090--Hb_004223_150 Hb_001159_050 Hb_001159_050 Hb_012395_090--Hb_001159_050 Hb_011013_040--Hb_000155_020 Hb_001266_010 Hb_001266_010 Hb_011013_040--Hb_001266_010 Hb_011013_040--Hb_001159_050 Hb_003038_230 Hb_003038_230 Hb_011013_040--Hb_003038_230 Hb_004223_150--Hb_001266_010 Hb_029695_090 Hb_029695_090 Hb_004223_150--Hb_029695_090 Hb_000881_020 Hb_000881_020 Hb_004223_150--Hb_000881_020 Hb_000608_270 Hb_000608_270 Hb_004223_150--Hb_000608_270 Hb_003435_030 Hb_003435_030 Hb_000046_120--Hb_003435_030 Hb_000046_120--Hb_001942_010 Hb_018591_020 Hb_018591_020 Hb_000046_120--Hb_018591_020 Hb_000002_500 Hb_000002_500 Hb_000046_120--Hb_000002_500 Hb_060253_010 Hb_060253_010 Hb_000046_120--Hb_060253_010 Hb_000046_120--Hb_012395_090 Hb_001942_010--Hb_003435_030 Hb_001942_010--Hb_011013_040 Hb_010136_010 Hb_010136_010 Hb_001942_010--Hb_010136_010 Hb_008225_050 Hb_008225_050 Hb_003371_080--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_003371_080--Hb_007537_040 Hb_004970_060 Hb_004970_060 Hb_003371_080--Hb_004970_060 Hb_008195_070 Hb_008195_070 Hb_003371_080--Hb_008195_070 Hb_000254_130 Hb_000254_130 Hb_003371_080--Hb_000254_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.504826 3.83894 2.46625 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0445194 0 0 0.139346 3.99905

CAGE analysis