Hb_002713_070

Information

Type -
Description -
Location Contig2713: 108595-111114
Sequence    

Annotation

kegg
ID pop:POPTR_0002s21620g
description POPTRDRAFT_552748; hypothetical protein
nr
ID XP_002302864.1
description hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
swissprot
ID Q47J85
description 50S ribosomal protein L30 OS=Dechloromonas aromatica (strain RCB) GN=rpmD PE=3 SV=1
trembl
ID B9GTU5
description Ribosomal protein L30 OS=Populus trichocarpa GN=POPTR_0002s21620g PE=3 SV=1
Gene Ontology
ID GO:0015934
description ribosomal protein l30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28426: 108685-109324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002713_070 0.0 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
2 Hb_000136_170 0.0568771733 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
3 Hb_002660_030 0.0586695867 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004375_100 0.0616995978 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
5 Hb_001505_020 0.0644022443 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
6 Hb_089839_020 0.0647426983 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
7 Hb_002925_030 0.0674483293 - - 40S ribosomal protein S16B [Hevea brasiliensis]
8 Hb_004129_040 0.0680477289 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
9 Hb_006816_530 0.0714392964 - - 60S ribosomal protein L18, putative [Ricinus communis]
10 Hb_009793_010 0.0739064489 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
11 Hb_003226_210 0.0754140874 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
12 Hb_003734_140 0.0768235838 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000574_480 0.0773174845 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
14 Hb_000227_230 0.079449653 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
15 Hb_009554_010 0.0797416792 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
16 Hb_000926_300 0.0806670143 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
17 Hb_001433_050 0.0811562946 - - 60S ribosomal protein L18, putative [Ricinus communis]
18 Hb_000283_110 0.081169508 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
19 Hb_011311_010 0.0820140061 - - 60S ribosomal protein L27C [Hevea brasiliensis]
20 Hb_005736_060 0.0820795037 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]

Gene co-expression network

sample Hb_002713_070 Hb_002713_070 Hb_000136_170 Hb_000136_170 Hb_002713_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_002713_070--Hb_002660_030 Hb_004375_100 Hb_004375_100 Hb_002713_070--Hb_004375_100 Hb_001505_020 Hb_001505_020 Hb_002713_070--Hb_001505_020 Hb_089839_020 Hb_089839_020 Hb_002713_070--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_002713_070--Hb_002925_030 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120 Hb_011311_010 Hb_011311_010 Hb_002660_030--Hb_011311_010 Hb_003226_210 Hb_003226_210 Hb_002660_030--Hb_003226_210 Hb_002660_030--Hb_000134_070 Hb_026398_010 Hb_026398_010 Hb_002660_030--Hb_026398_010 Hb_002660_030--Hb_002925_030 Hb_010068_020 Hb_010068_020 Hb_004375_100--Hb_010068_020 Hb_002701_240 Hb_002701_240 Hb_004375_100--Hb_002701_240 Hb_001814_050 Hb_001814_050 Hb_004375_100--Hb_001814_050 Hb_156947_010 Hb_156947_010 Hb_004375_100--Hb_156947_010 Hb_004375_100--Hb_001505_020 Hb_006816_530 Hb_006816_530 Hb_001505_020--Hb_006816_530 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230 Hb_001505_020--Hb_001814_050 Hb_003734_140 Hb_003734_140 Hb_089839_020--Hb_003734_140 Hb_089839_020--Hb_000227_230 Hb_000580_080 Hb_000580_080 Hb_089839_020--Hb_000580_080 Hb_089839_020--Hb_002925_030 Hb_089839_020--Hb_000136_170 Hb_003398_120 Hb_003398_120 Hb_002925_030--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_002925_030--Hb_001998_050 Hb_002925_030--Hb_000227_230 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002925_030--Hb_011311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2307 12.9752 13.0231 19.901 27.9325 34.4007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6745 98.6795 33.8599 28.1396 13.8076

CAGE analysis