Hb_002716_060

Information

Type -
Description -
Location Contig2716: 109223-116912
Sequence    

Annotation

kegg
ID rcu:RCOM_0641750
description carboxylesterase np, putative
nr
ID XP_002521933.1
description carboxylesterase np, putative [Ricinus communis]
swissprot
ID P9WNH1
description Putative non-heme bromoperoxidase BpoC OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=bpoC PE=1 SV=1
trembl
ID B9S7G4
description Carboxylesterase np, putative OS=Ricinus communis GN=RCOM_0641750 PE=4 SV=1
Gene Ontology
ID GO:0003824
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28433: 109341-116682 , PASA_asmbl_28436: 114760-115057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002716_060 0.0 - - carboxylesterase np, putative [Ricinus communis]
2 Hb_001025_120 0.0516376037 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
3 Hb_018790_020 0.0678994156 - - protein kinase, putative [Ricinus communis]
4 Hb_000476_060 0.072877974 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
5 Hb_004109_320 0.0730652486 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
6 Hb_043792_010 0.0733778287 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
7 Hb_000282_090 0.0739423292 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
8 Hb_170416_010 0.0757669425 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
9 Hb_004100_050 0.0777364858 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
10 Hb_089839_010 0.0795454817 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
11 Hb_000510_360 0.0797637202 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
12 Hb_001761_120 0.0797805044 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
13 Hb_000975_210 0.0803948648 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
14 Hb_007894_150 0.0805734102 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
15 Hb_000089_210 0.0810597298 - - unknown [Medicago truncatula]
16 Hb_000085_170 0.0817221437 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
17 Hb_000304_080 0.082117177 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
18 Hb_000254_100 0.0821511877 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
19 Hb_001635_110 0.0842973626 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
20 Hb_001703_040 0.0863923397 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002716_060 Hb_002716_060 Hb_001025_120 Hb_001025_120 Hb_002716_060--Hb_001025_120 Hb_018790_020 Hb_018790_020 Hb_002716_060--Hb_018790_020 Hb_000476_060 Hb_000476_060 Hb_002716_060--Hb_000476_060 Hb_004109_320 Hb_004109_320 Hb_002716_060--Hb_004109_320 Hb_043792_010 Hb_043792_010 Hb_002716_060--Hb_043792_010 Hb_000282_090 Hb_000282_090 Hb_002716_060--Hb_000282_090 Hb_001025_120--Hb_018790_020 Hb_000676_070 Hb_000676_070 Hb_001025_120--Hb_000676_070 Hb_007894_150 Hb_007894_150 Hb_001025_120--Hb_007894_150 Hb_004807_020 Hb_004807_020 Hb_001025_120--Hb_004807_020 Hb_000028_520 Hb_000028_520 Hb_001025_120--Hb_000028_520 Hb_018790_020--Hb_007894_150 Hb_018790_020--Hb_000028_520 Hb_000365_230 Hb_000365_230 Hb_018790_020--Hb_000365_230 Hb_018790_020--Hb_004109_320 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_004109_320--Hb_007894_150 Hb_004109_320--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_004109_320--Hb_164390_010 Hb_002014_010 Hb_002014_010 Hb_004109_320--Hb_002014_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050 Hb_000959_230 Hb_000959_230 Hb_043792_010--Hb_000959_230 Hb_002909_040 Hb_002909_040 Hb_043792_010--Hb_002909_040 Hb_000089_210 Hb_000089_210 Hb_043792_010--Hb_000089_210 Hb_001761_120 Hb_001761_120 Hb_043792_010--Hb_001761_120 Hb_002326_040 Hb_002326_040 Hb_043792_010--Hb_002326_040 Hb_002110_160 Hb_002110_160 Hb_000282_090--Hb_002110_160 Hb_000207_200 Hb_000207_200 Hb_000282_090--Hb_000207_200 Hb_004870_050 Hb_004870_050 Hb_000282_090--Hb_004870_050 Hb_000282_090--Hb_000089_210 Hb_002413_010 Hb_002413_010 Hb_000282_090--Hb_002413_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63563 9.50174 15.4423 8.07761 7.31575 3.86569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.52629 7.16002 7.5895 7.872 9.13582

CAGE analysis