Hb_002716_070

Information

Type -
Description -
Location Contig2716: 121681-125360
Sequence    

Annotation

kegg
ID rcu:RCOM_1241260
description Protein ABIL2, putative
nr
ID XP_012080675.1
description PREDICTED: protein ABIL2 [Jatropha curcas]
swissprot
ID Q9M3A3
description Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=2 SV=1
trembl
ID A0A067LLC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18175 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28439: 121590-124726 , PASA_asmbl_28440: 124152-124254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002716_070 0.0 - - PREDICTED: protein ABIL2 [Jatropha curcas]
2 Hb_000170_010 0.0717990335 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_003175_040 0.0743281061 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
4 Hb_004837_140 0.0755313063 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
5 Hb_002028_130 0.0762029856 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
6 Hb_001718_100 0.0776452761 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
7 Hb_000205_270 0.0780761296 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
8 Hb_003927_130 0.0784030367 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
9 Hb_008289_060 0.0807570194 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
10 Hb_004899_320 0.0810897298 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
11 Hb_005432_030 0.0817626459 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
12 Hb_001427_120 0.0824853433 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
13 Hb_000046_110 0.0848945583 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
14 Hb_000627_120 0.0850711362 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
15 Hb_002918_200 0.0850867344 - - -
16 Hb_021650_030 0.085526625 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
17 Hb_012338_010 0.0855526374 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005488_010 0.0863393526 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006693_030 0.0866953513 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
20 Hb_000146_020 0.0867180989 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002716_070 Hb_002716_070 Hb_000170_010 Hb_000170_010 Hb_002716_070--Hb_000170_010 Hb_003175_040 Hb_003175_040 Hb_002716_070--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_002716_070--Hb_004837_140 Hb_002028_130 Hb_002028_130 Hb_002716_070--Hb_002028_130 Hb_001718_100 Hb_001718_100 Hb_002716_070--Hb_001718_100 Hb_000205_270 Hb_000205_270 Hb_002716_070--Hb_000205_270 Hb_000170_010--Hb_004837_140 Hb_002963_010 Hb_002963_010 Hb_000170_010--Hb_002963_010 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200 Hb_004108_230 Hb_004108_230 Hb_003175_040--Hb_004108_230 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_003175_040--Hb_002918_200 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_004837_140--Hb_002918_200 Hb_004837_140--Hb_002963_010 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_004837_140--Hb_012338_010 Hb_002028_130--Hb_001718_100 Hb_002078_460 Hb_002078_460 Hb_002028_130--Hb_002078_460 Hb_001616_060 Hb_001616_060 Hb_002028_130--Hb_001616_060 Hb_000030_100 Hb_000030_100 Hb_002028_130--Hb_000030_100 Hb_001862_100 Hb_001862_100 Hb_002028_130--Hb_001862_100 Hb_001427_120 Hb_001427_120 Hb_001718_100--Hb_001427_120 Hb_071736_020 Hb_071736_020 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_000086_570 Hb_000086_570 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001718_100--Hb_001691_210 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7225 4.27926 3.8748 7.73577 19.3186 19.8107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.8236 31.0994 31.2779 8.01223 6.04264

CAGE analysis