Hb_002716_090

Information

Type -
Description -
Location Contig2716: 140012-142837
Sequence    

Annotation

kegg
ID tcc:TCM_030971
description Small nuclear ribonucleoprotein family protein isoform 1
nr
ID ADR71257.1
description U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
swissprot
ID Q8VYI0
description Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1
trembl
ID I3NMM0
description U6 snRNA-associated Sm-like protein LSm8 OS=Hevea brasiliensis GN=LSM8 PE=2 SV=1
Gene Ontology
ID GO:0019013
description sm-like protein lsm8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28442: 140045-142820
cDNA
(Sanger)
(ID:Location)		 020_O09.ab1: 140056-142793

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002716_090 0.0 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
2 Hb_001247_350 0.0682273485 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
3 Hb_001638_260 0.0740595351 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
4 Hb_003927_140 0.0797052154 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
5 Hb_005496_030 0.085972005 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
6 Hb_009554_010 0.0898473511 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
7 Hb_001214_140 0.0916026984 - - 60S ribosomal protein L27a, putative [Ricinus communis]
8 Hb_012022_120 0.0935670906 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
9 Hb_000526_040 0.094554373 - - 60S ribosomal protein L6, putative [Ricinus communis]
10 Hb_000699_160 0.0953828866 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
11 Hb_000545_150 0.0966008133 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
12 Hb_010810_020 0.0970673469 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
13 Hb_000505_140 0.0977948556 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
14 Hb_000526_150 0.0985901781 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
15 Hb_000617_090 0.0986992546 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
16 Hb_003893_050 0.1026692112 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
17 Hb_003528_060 0.1033291228 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
18 Hb_171900_050 0.1043284106 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032202_090 0.104826987 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
20 Hb_012573_070 0.104931916 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002716_090 Hb_002716_090 Hb_001247_350 Hb_001247_350 Hb_002716_090--Hb_001247_350 Hb_001638_260 Hb_001638_260 Hb_002716_090--Hb_001638_260 Hb_003927_140 Hb_003927_140 Hb_002716_090--Hb_003927_140 Hb_005496_030 Hb_005496_030 Hb_002716_090--Hb_005496_030 Hb_009554_010 Hb_009554_010 Hb_002716_090--Hb_009554_010 Hb_001214_140 Hb_001214_140 Hb_002716_090--Hb_001214_140 Hb_001247_350--Hb_005496_030 Hb_000526_040 Hb_000526_040 Hb_001247_350--Hb_000526_040 Hb_000545_150 Hb_000545_150 Hb_001247_350--Hb_000545_150 Hb_000948_190 Hb_000948_190 Hb_001247_350--Hb_000948_190 Hb_032202_090 Hb_032202_090 Hb_001247_350--Hb_032202_090 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020 Hb_003528_060 Hb_003528_060 Hb_003927_140--Hb_003528_060 Hb_000630_060 Hb_000630_060 Hb_003927_140--Hb_000630_060 Hb_003927_140--Hb_001818_020 Hb_012573_070 Hb_012573_070 Hb_003927_140--Hb_012573_070 Hb_001538_120 Hb_001538_120 Hb_003927_140--Hb_001538_120 Hb_005496_030--Hb_000526_040 Hb_005496_030--Hb_000545_150 Hb_005496_030--Hb_001638_260 Hb_000617_090 Hb_000617_090 Hb_005496_030--Hb_000617_090 Hb_009793_010 Hb_009793_010 Hb_009554_010--Hb_009793_010 Hb_003226_210 Hb_003226_210 Hb_009554_010--Hb_003226_210 Hb_002713_070 Hb_002713_070 Hb_009554_010--Hb_002713_070 Hb_006816_530 Hb_006816_530 Hb_009554_010--Hb_006816_530 Hb_000086_550 Hb_000086_550 Hb_009554_010--Hb_000086_550 Hb_000438_220 Hb_000438_220 Hb_001214_140--Hb_000438_220 Hb_001214_140--Hb_001638_260 Hb_002742_050 Hb_002742_050 Hb_001214_140--Hb_002742_050 Hb_004052_020 Hb_004052_020 Hb_001214_140--Hb_004052_020 Hb_003641_020 Hb_003641_020 Hb_001214_140--Hb_003641_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9801 12.2278 28.1565 47.8075 53.5104 74.756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.9101 188.699 52.3816 20.0387 10.8866

CAGE analysis