Hb_002716_110

Information

Type -
Description -
Location Contig2716: 153897-158867
Sequence    

Annotation

kegg
ID rcu:RCOM_1241520
description hypothetical protein
nr
ID XP_012086463.1
description PREDICTED: interaptin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23927 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28443: 154048-156779 , PASA_asmbl_28444: 156808-158527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002716_110 0.0 - - PREDICTED: interaptin [Jatropha curcas]
2 Hb_000679_030 0.1282809006 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
3 Hb_002397_050 0.1286162161 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
4 Hb_005493_010 0.1438912887 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
5 Hb_002817_050 0.1488444082 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
6 Hb_003688_140 0.1521832174 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
7 Hb_000054_030 0.1524987562 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
8 Hb_056196_010 0.1527195336 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
9 Hb_001014_020 0.1532284318 - - gene GA family protein [Populus trichocarpa]
10 Hb_000173_270 0.1551215685 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
11 Hb_012132_020 0.1558717215 - - glutamine synthetase [Hevea brasiliensis]
12 Hb_074109_010 0.1560768718 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
13 Hb_006570_060 0.1588998868 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
14 Hb_000457_250 0.1641703573 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
15 Hb_121089_010 0.1659432663 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
16 Hb_000946_060 0.1662250101 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like isoform X2 [Jatropha curcas]
17 Hb_005488_130 0.1693948764 - - transporter, putative [Ricinus communis]
18 Hb_000243_060 0.176623626 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
19 Hb_164945_020 0.1778825243 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
20 Hb_000181_330 0.1785243849 - - ubiquitin ligase protein cop1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002716_110 Hb_002716_110 Hb_000679_030 Hb_000679_030 Hb_002716_110--Hb_000679_030 Hb_002397_050 Hb_002397_050 Hb_002716_110--Hb_002397_050 Hb_005493_010 Hb_005493_010 Hb_002716_110--Hb_005493_010 Hb_002817_050 Hb_002817_050 Hb_002716_110--Hb_002817_050 Hb_003688_140 Hb_003688_140 Hb_002716_110--Hb_003688_140 Hb_000054_030 Hb_000054_030 Hb_002716_110--Hb_000054_030 Hb_005488_130 Hb_005488_130 Hb_000679_030--Hb_005488_130 Hb_056196_010 Hb_056196_010 Hb_000679_030--Hb_056196_010 Hb_164945_020 Hb_164945_020 Hb_000679_030--Hb_164945_020 Hb_000069_690 Hb_000069_690 Hb_000679_030--Hb_000069_690 Hb_000679_030--Hb_002397_050 Hb_002397_050--Hb_000054_030 Hb_000457_250 Hb_000457_250 Hb_002397_050--Hb_000457_250 Hb_000115_360 Hb_000115_360 Hb_002397_050--Hb_000115_360 Hb_004032_110 Hb_004032_110 Hb_002397_050--Hb_004032_110 Hb_006736_050 Hb_006736_050 Hb_002397_050--Hb_006736_050 Hb_005493_010--Hb_002817_050 Hb_030827_010 Hb_030827_010 Hb_005493_010--Hb_030827_010 Hb_001278_090 Hb_001278_090 Hb_005493_010--Hb_001278_090 Hb_002949_020 Hb_002949_020 Hb_005493_010--Hb_002949_020 Hb_002235_110 Hb_002235_110 Hb_005493_010--Hb_002235_110 Hb_074197_030 Hb_074197_030 Hb_005493_010--Hb_074197_030 Hb_000901_010 Hb_000901_010 Hb_002817_050--Hb_000901_010 Hb_000181_220 Hb_000181_220 Hb_002817_050--Hb_000181_220 Hb_004374_160 Hb_004374_160 Hb_002817_050--Hb_004374_160 Hb_010557_020 Hb_010557_020 Hb_002817_050--Hb_010557_020 Hb_000162_200 Hb_000162_200 Hb_002817_050--Hb_000162_200 Hb_000538_300 Hb_000538_300 Hb_003688_140--Hb_000538_300 Hb_000264_280 Hb_000264_280 Hb_003688_140--Hb_000264_280 Hb_000684_200 Hb_000684_200 Hb_003688_140--Hb_000684_200 Hb_000005_100 Hb_000005_100 Hb_003688_140--Hb_000005_100 Hb_004162_270 Hb_004162_270 Hb_003688_140--Hb_004162_270 Hb_010098_040 Hb_010098_040 Hb_003688_140--Hb_010098_040 Hb_000054_030--Hb_002235_110 Hb_000054_030--Hb_002949_020 Hb_003226_200 Hb_003226_200 Hb_000054_030--Hb_003226_200 Hb_033152_110 Hb_033152_110 Hb_000054_030--Hb_033152_110 Hb_000054_030--Hb_074197_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0337127 3.19463 8.44752 7.65851 0.006164 0.0110743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.768 2.26362 0.0630972 2.24406 11.3546

CAGE analysis