Hb_002716_130

Information

Type -
Description -
Location Contig2716: 174540-192386
Sequence    

Annotation

kegg
ID cit:102606974
description uncharacterized LOC102606974
nr
ID XP_012086466.1
description PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JSK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23928 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28445: 174556-174703 , PASA_asmbl_28447: 177852-177995 , PASA_asmbl_28448: 179371-180163 , PASA_asmbl_28449: 182440-184147 , PASA_asmbl_28451: 191927-192398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002716_130 0.0 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
2 Hb_004117_130 0.0606246014 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
3 Hb_000010_330 0.0632916217 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
4 Hb_000085_160 0.065815554 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
5 Hb_000212_240 0.0670813381 - - short-chain dehydrogenase, putative [Ricinus communis]
6 Hb_006252_040 0.0680919141 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
7 Hb_007317_110 0.0689135218 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
8 Hb_032050_040 0.0692200006 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
9 Hb_000318_290 0.0693581924 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
10 Hb_003665_060 0.0702009255 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
11 Hb_016898_010 0.0703213232 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
12 Hb_000608_320 0.0722178091 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
13 Hb_000193_190 0.0723668649 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
14 Hb_007059_010 0.0730257285 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
15 Hb_054865_150 0.0737158755 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
16 Hb_000025_110 0.0750490916 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
17 Hb_000127_040 0.0756219749 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
18 Hb_001638_170 0.0758341897 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
19 Hb_008643_210 0.0762642299 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
20 Hb_004102_140 0.0763544886 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002716_130 Hb_002716_130 Hb_004117_130 Hb_004117_130 Hb_002716_130--Hb_004117_130 Hb_000010_330 Hb_000010_330 Hb_002716_130--Hb_000010_330 Hb_000085_160 Hb_000085_160 Hb_002716_130--Hb_000085_160 Hb_000212_240 Hb_000212_240 Hb_002716_130--Hb_000212_240 Hb_006252_040 Hb_006252_040 Hb_002716_130--Hb_006252_040 Hb_007317_110 Hb_007317_110 Hb_002716_130--Hb_007317_110 Hb_020719_030 Hb_020719_030 Hb_004117_130--Hb_020719_030 Hb_000260_170 Hb_000260_170 Hb_004117_130--Hb_000260_170 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000023_220 Hb_000023_220 Hb_004117_130--Hb_000023_220 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_000085_160--Hb_007317_110 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000011_200 Hb_000011_200 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_000085_160--Hb_003665_060 Hb_000085_160--Hb_000010_330 Hb_004881_020 Hb_004881_020 Hb_000212_240--Hb_004881_020 Hb_000212_240--Hb_006252_040 Hb_000025_110 Hb_000025_110 Hb_000212_240--Hb_000025_110 Hb_000212_240--Hb_004117_130 Hb_000606_090 Hb_000606_090 Hb_000212_240--Hb_000606_090 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_003952_070 Hb_003952_070 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_006252_040--Hb_004881_020 Hb_006827_020 Hb_006827_020 Hb_007317_110--Hb_006827_020 Hb_007317_110--Hb_003665_060 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5875 3.16701 2.40381 4.66878 5.85373 7.92814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.33818 4.26096 4.30756 3.86129 3.6626

CAGE analysis