Hb_002716_140

Information

Type -
Description -
Location Contig2716: 194907-195746
Sequence    

Annotation

kegg
ID rcu:RCOM_1241880
description hypothetical protein
nr
ID XP_012067141.1
description PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
swissprot
ID Q84WF5
description Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1
trembl
ID A0A067L477
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03264 PE=4 SV=1
Gene Ontology
ID GO:0006810
description probable vamp-like protein at1g33475

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002716_140 0.0 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
2 Hb_031091_010 0.0692867833 - - crooked neck protein, putative [Ricinus communis]
3 Hb_003581_120 0.0694728741 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
4 Hb_000034_050 0.0741174662 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
5 Hb_008714_020 0.0753741768 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
6 Hb_002400_180 0.0754267589 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008695_120 0.0754618729 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
8 Hb_001829_010 0.0795383706 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
9 Hb_000046_450 0.0798233209 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
10 Hb_002942_160 0.0799785221 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
11 Hb_000684_420 0.0801554894 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
12 Hb_000316_030 0.0818577795 - - zinc finger protein, putative [Ricinus communis]
13 Hb_031862_180 0.0823456 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
14 Hb_001019_170 0.0830935267 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
15 Hb_000322_100 0.0834970503 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
16 Hb_000390_060 0.0884293644 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
17 Hb_001863_110 0.0901716917 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_002097_090 0.0926954983 - - Splicing factor 3A subunit, putative [Ricinus communis]
19 Hb_000866_030 0.0930518711 - - hypothetical protein RCOM_1615820 [Ricinus communis]
20 Hb_000186_280 0.0948898474 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002716_140 Hb_002716_140 Hb_031091_010 Hb_031091_010 Hb_002716_140--Hb_031091_010 Hb_003581_120 Hb_003581_120 Hb_002716_140--Hb_003581_120 Hb_000034_050 Hb_000034_050 Hb_002716_140--Hb_000034_050 Hb_008714_020 Hb_008714_020 Hb_002716_140--Hb_008714_020 Hb_002400_180 Hb_002400_180 Hb_002716_140--Hb_002400_180 Hb_008695_120 Hb_008695_120 Hb_002716_140--Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_001616_090 Hb_001616_090 Hb_031091_010--Hb_001616_090 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_031091_010--Hb_003581_120 Hb_007643_050 Hb_007643_050 Hb_031091_010--Hb_007643_050 Hb_003581_120--Hb_002400_180 Hb_003581_120--Hb_008695_120 Hb_002097_090 Hb_002097_090 Hb_003581_120--Hb_002097_090 Hb_000803_300 Hb_000803_300 Hb_003581_120--Hb_000803_300 Hb_001019_170 Hb_001019_170 Hb_003581_120--Hb_001019_170 Hb_003581_120--Hb_000034_050 Hb_000034_050--Hb_002400_180 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_000699_250 Hb_000699_250 Hb_008714_020--Hb_000699_250 Hb_000046_450 Hb_000046_450 Hb_008714_020--Hb_000046_450 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_008695_120--Hb_000322_100 Hb_008695_120--Hb_001019_170 Hb_008695_120--Hb_002400_180 Hb_002942_160 Hb_002942_160 Hb_008695_120--Hb_002942_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.2496 35.4732 10.5306 22.336 51.3668 78.9386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7068 23.39 25.315 13.2932 17.0628

CAGE analysis