Hb_002716_150

Information

Type -
Description -
Location Contig2716: 197327-205662
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01470g
description POPTRDRAFT_1100713; hypothetical protein
nr
ID ABV25893.1
description starch synthase isoform I [Manihot esculenta]
swissprot
ID P93568
description Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1
trembl
ID B3SRP2
description Starch synthase, chloroplastic/amyloplastic OS=Manihot esculenta GN=SSI PE=2 SV=1
Gene Ontology
ID GO:0004373
description starch synthase chloroplastic amyloplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28454: 197659-201055 , PASA_asmbl_28455: 201270-203357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002716_150 0.0 - - starch synthase isoform I [Manihot esculenta]
2 Hb_135810_010 0.0999420134 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
3 Hb_014568_030 0.1029154041 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
4 Hb_001855_010 0.1083134968 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
5 Hb_031042_040 0.1089276974 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
6 Hb_003055_050 0.1114686815 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
7 Hb_003376_100 0.1122849311 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
8 Hb_012760_170 0.1169302906 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
9 Hb_002955_030 0.1205857533 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000529_160 0.1209696731 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
11 Hb_003352_050 0.1228477666 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
12 Hb_011282_030 0.1260021323 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
13 Hb_017098_030 0.1270863992 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
14 Hb_002377_040 0.1276340047 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_000003_090 0.128529337 - - -
16 Hb_000084_310 0.1292352866 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
17 Hb_076787_010 0.1295824268 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
18 Hb_000176_110 0.1304978393 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
19 Hb_002014_080 0.1317624227 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
20 Hb_001584_110 0.1319303424 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002716_150 Hb_002716_150 Hb_135810_010 Hb_135810_010 Hb_002716_150--Hb_135810_010 Hb_014568_030 Hb_014568_030 Hb_002716_150--Hb_014568_030 Hb_001855_010 Hb_001855_010 Hb_002716_150--Hb_001855_010 Hb_031042_040 Hb_031042_040 Hb_002716_150--Hb_031042_040 Hb_003055_050 Hb_003055_050 Hb_002716_150--Hb_003055_050 Hb_003376_100 Hb_003376_100 Hb_002716_150--Hb_003376_100 Hb_002027_220 Hb_002027_220 Hb_135810_010--Hb_002027_220 Hb_000258_080 Hb_000258_080 Hb_135810_010--Hb_000258_080 Hb_135810_010--Hb_031042_040 Hb_011282_030 Hb_011282_030 Hb_135810_010--Hb_011282_030 Hb_000529_160 Hb_000529_160 Hb_135810_010--Hb_000529_160 Hb_000077_050 Hb_000077_050 Hb_014568_030--Hb_000077_050 Hb_001584_110 Hb_001584_110 Hb_014568_030--Hb_001584_110 Hb_002014_080 Hb_002014_080 Hb_014568_030--Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_014568_030--Hb_024714_030 Hb_014568_030--Hb_001855_010 Hb_014568_030--Hb_011282_030 Hb_001135_160 Hb_001135_160 Hb_001855_010--Hb_001135_160 Hb_000023_140 Hb_000023_140 Hb_001855_010--Hb_000023_140 Hb_005063_040 Hb_005063_040 Hb_001855_010--Hb_005063_040 Hb_005754_060 Hb_005754_060 Hb_001855_010--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_001855_010--Hb_071736_010 Hb_002955_030 Hb_002955_030 Hb_031042_040--Hb_002955_030 Hb_010174_130 Hb_010174_130 Hb_031042_040--Hb_010174_130 Hb_002377_040 Hb_002377_040 Hb_031042_040--Hb_002377_040 Hb_000085_340 Hb_000085_340 Hb_031042_040--Hb_000085_340 Hb_000034_140 Hb_000034_140 Hb_031042_040--Hb_000034_140 Hb_017098_030 Hb_017098_030 Hb_003055_050--Hb_017098_030 Hb_000345_560 Hb_000345_560 Hb_003055_050--Hb_000345_560 Hb_003055_050--Hb_000085_340 Hb_007992_030 Hb_007992_030 Hb_003055_050--Hb_007992_030 Hb_003055_050--Hb_002955_030 Hb_001493_100 Hb_001493_100 Hb_003055_050--Hb_001493_100 Hb_005829_010 Hb_005829_010 Hb_003376_100--Hb_005829_010 Hb_000265_150 Hb_000265_150 Hb_003376_100--Hb_000265_150 Hb_000085_060 Hb_000085_060 Hb_003376_100--Hb_000085_060 Hb_000205_120 Hb_000205_120 Hb_003376_100--Hb_000205_120 Hb_076787_010 Hb_076787_010 Hb_003376_100--Hb_076787_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1734 2.27827 2.52994 5.31878 18.0908 22.3276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.965 7.72485 11.2494 1.94013 7.15264

CAGE analysis