Hb_002719_080

Information

Type -
Description -
Location Contig2719: 100663-102861
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27920g
description hypothetical protein
nr
ID XP_006382108.1
description hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G911
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s27920g PE=4 SV=1
Gene Ontology
ID GO:0044444
description nucleic acid binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002719_080 0.0 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
2 Hb_005914_200 0.1048576377 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
3 Hb_026048_070 0.1058566556 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
4 Hb_002518_290 0.1059371117 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
5 Hb_000648_020 0.1085537955 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
6 Hb_000364_210 0.1096407807 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
7 Hb_000236_150 0.111454187 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
8 Hb_004754_070 0.1174385989 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
9 Hb_000389_080 0.1233949247 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
10 Hb_005474_060 0.1234458395 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
11 Hb_000707_020 0.1236167799 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
12 Hb_062135_020 0.1238567462 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
13 Hb_001700_020 0.1241656545 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
14 Hb_012490_050 0.1243290663 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
15 Hb_103118_020 0.124848613 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
16 Hb_000224_090 0.1271854136 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
17 Hb_000905_180 0.127836022 - - 60S ribosomal protein L31A [Hevea brasiliensis]
18 Hb_001780_050 0.1295080746 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
19 Hb_027380_180 0.1300535538 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
20 Hb_000163_130 0.1302993339 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]

Gene co-expression network

sample Hb_002719_080 Hb_002719_080 Hb_005914_200 Hb_005914_200 Hb_002719_080--Hb_005914_200 Hb_026048_070 Hb_026048_070 Hb_002719_080--Hb_026048_070 Hb_002518_290 Hb_002518_290 Hb_002719_080--Hb_002518_290 Hb_000648_020 Hb_000648_020 Hb_002719_080--Hb_000648_020 Hb_000364_210 Hb_000364_210 Hb_002719_080--Hb_000364_210 Hb_000236_150 Hb_000236_150 Hb_002719_080--Hb_000236_150 Hb_001780_050 Hb_001780_050 Hb_005914_200--Hb_001780_050 Hb_005914_200--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_005914_200--Hb_012539_020 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_000163_130 Hb_000163_130 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_011644_030 Hb_011644_030 Hb_026048_070--Hb_011644_030 Hb_003623_050 Hb_003623_050 Hb_026048_070--Hb_003623_050 Hb_001016_090 Hb_001016_090 Hb_026048_070--Hb_001016_090 Hb_003053_030 Hb_003053_030 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360 Hb_062135_020 Hb_062135_020 Hb_002518_290--Hb_062135_020 Hb_002518_290--Hb_000976_250 Hb_002518_290--Hb_012539_020 Hb_002518_290--Hb_005914_200 Hb_002518_290--Hb_000236_150 Hb_003086_060 Hb_003086_060 Hb_002518_290--Hb_003086_060 Hb_002025_300 Hb_002025_300 Hb_000648_020--Hb_002025_300 Hb_124755_010 Hb_124755_010 Hb_000648_020--Hb_124755_010 Hb_001427_230 Hb_001427_230 Hb_000648_020--Hb_001427_230 Hb_012490_050 Hb_012490_050 Hb_000648_020--Hb_012490_050 Hb_000224_090 Hb_000224_090 Hb_000648_020--Hb_000224_090 Hb_002471_080 Hb_002471_080 Hb_000648_020--Hb_002471_080 Hb_001862_100 Hb_001862_100 Hb_000364_210--Hb_001862_100 Hb_000364_210--Hb_000648_020 Hb_003938_180 Hb_003938_180 Hb_000364_210--Hb_003938_180 Hb_002539_090 Hb_002539_090 Hb_000364_210--Hb_002539_090 Hb_003929_120 Hb_003929_120 Hb_000364_210--Hb_003929_120 Hb_000236_150--Hb_001780_050 Hb_000236_150--Hb_000224_090 Hb_000905_180 Hb_000905_180 Hb_000236_150--Hb_000905_180 Hb_000236_150--Hb_000163_130 Hb_000236_150--Hb_012539_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.53955 0.229652 0.165461 0.518235 0.32971 1.29933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30446 4.59705 2.34591 1.71011 0.808758

CAGE analysis