Hb_002722_010

Information

Type -
Description -
Location Contig2722: 35052-35636
Sequence    

Annotation

kegg
ID rcu:RCOM_0042270
description Disease resistance response protein, putative
nr
ID XP_002531174.1
description Disease resistance response protein, putative [Ricinus communis]
swissprot
ID Q9C523
description Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1
trembl
ID B9SYV5
description Disease resistance response protein, putative OS=Ricinus communis GN=RCOM_0042270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_B10.ab1: 35011-35740

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002722_010 0.0 - - Disease resistance response protein, putative [Ricinus communis]
2 Hb_000080_160 0.181866565 - - Peroxin 13 [Theobroma cacao]
3 Hb_000544_160 0.2117757768 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
4 Hb_010712_070 0.2237996502 - - Galactoside 2-alpha-L-fucosyltransferase [Aegilops tauschii]
5 Hb_000030_160 0.2406894889 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
6 Hb_078897_010 0.2532776779 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
7 Hb_021650_020 0.2868289806 - - nitrate transporter, putative [Ricinus communis]
8 Hb_012606_010 0.2877927474 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
9 Hb_000312_050 0.2886624362 - - transcription factor, putative [Ricinus communis]
10 Hb_000516_040 0.2898907412 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
11 Hb_003994_130 0.290122907 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Jatropha curcas]
12 Hb_004125_010 0.2914054065 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
13 Hb_001366_120 0.2926724105 - - unknown [Zea mays]
14 Hb_000215_370 0.2937053166 - - myoinositol oxygenase, putative [Ricinus communis]
15 Hb_000184_160 0.2942519637 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
16 Hb_000070_030 0.295771252 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
17 Hb_000883_170 0.2969455413 - - senescence-associated family protein [Populus trichocarpa]
18 Hb_004032_160 0.2977888864 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
19 Hb_005784_070 0.2984514987 - - PREDICTED: protein TONSOKU isoform X2 [Jatropha curcas]
20 Hb_089206_010 0.2985369897 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_002722_010 Hb_002722_010 Hb_000080_160 Hb_000080_160 Hb_002722_010--Hb_000080_160 Hb_000544_160 Hb_000544_160 Hb_002722_010--Hb_000544_160 Hb_010712_070 Hb_010712_070 Hb_002722_010--Hb_010712_070 Hb_000030_160 Hb_000030_160 Hb_002722_010--Hb_000030_160 Hb_078897_010 Hb_078897_010 Hb_002722_010--Hb_078897_010 Hb_021650_020 Hb_021650_020 Hb_002722_010--Hb_021650_020 Hb_006472_080 Hb_006472_080 Hb_000080_160--Hb_006472_080 Hb_000080_160--Hb_021650_020 Hb_000618_090 Hb_000618_090 Hb_000080_160--Hb_000618_090 Hb_003994_130 Hb_003994_130 Hb_000080_160--Hb_003994_130 Hb_001021_070 Hb_001021_070 Hb_000080_160--Hb_001021_070 Hb_000544_160--Hb_078897_010 Hb_000544_160--Hb_010712_070 Hb_006921_040 Hb_006921_040 Hb_000544_160--Hb_006921_040 Hb_000107_470 Hb_000107_470 Hb_000544_160--Hb_000107_470 Hb_001366_120 Hb_001366_120 Hb_000544_160--Hb_001366_120 Hb_010712_070--Hb_078897_010 Hb_102632_010 Hb_102632_010 Hb_010712_070--Hb_102632_010 Hb_010712_070--Hb_000030_160 Hb_007765_070 Hb_007765_070 Hb_010712_070--Hb_007765_070 Hb_004032_160 Hb_004032_160 Hb_000030_160--Hb_004032_160 Hb_005784_070 Hb_005784_070 Hb_000030_160--Hb_005784_070 Hb_000883_170 Hb_000883_170 Hb_000030_160--Hb_000883_170 Hb_000009_220 Hb_000009_220 Hb_000030_160--Hb_000009_220 Hb_004003_030 Hb_004003_030 Hb_000030_160--Hb_004003_030 Hb_007793_050 Hb_007793_050 Hb_000030_160--Hb_007793_050 Hb_078897_010--Hb_001366_120 Hb_001711_050 Hb_001711_050 Hb_078897_010--Hb_001711_050 Hb_000312_050 Hb_000312_050 Hb_078897_010--Hb_000312_050 Hb_009288_030 Hb_009288_030 Hb_021650_020--Hb_009288_030 Hb_000012_320 Hb_000012_320 Hb_021650_020--Hb_000012_320 Hb_000244_150 Hb_000244_150 Hb_021650_020--Hb_000244_150 Hb_001476_130 Hb_001476_130 Hb_021650_020--Hb_001476_130 Hb_021650_020--Hb_006472_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.8886 9.55997 64.2455 47.8994 8.72722 4.72756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209752 0.247257 44.0846 30.7718 18.5842

CAGE analysis