Hb_002725_120

Information

Type -
Description -
Location Contig2725: 190177-191754
Sequence    

Annotation

kegg
ID cit:102609207
description pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like
nr
ID XP_012089966.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
swissprot
ID Q9MA50
description Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1
trembl
ID A0A067F459
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010496mg PE=4 SV=1
Gene Ontology
ID GO:0009451
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28491: 190186-190673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002725_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
2 Hb_009767_110 0.0565735686 - - -
3 Hb_006649_050 0.0593105632 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
4 Hb_000291_050 0.0630059239 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
5 Hb_003142_020 0.0688594376 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
6 Hb_005496_130 0.0719919063 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
7 Hb_000165_250 0.0725494837 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
8 Hb_002110_150 0.078617886 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
9 Hb_001671_010 0.0805754881 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
10 Hb_004374_070 0.0820708971 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
11 Hb_017358_030 0.0831240446 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
12 Hb_009382_010 0.0832356298 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
13 Hb_000352_270 0.0839183098 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
14 Hb_000574_400 0.084392596 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
15 Hb_001198_100 0.0844240501 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
16 Hb_044728_010 0.0856141077 - - -
17 Hb_000041_100 0.0857642103 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
18 Hb_008554_130 0.0867064609 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
19 Hb_004684_010 0.0867539366 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
20 Hb_000270_670 0.0875669565 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]

Gene co-expression network

sample Hb_002725_120 Hb_002725_120 Hb_009767_110 Hb_009767_110 Hb_002725_120--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_002725_120--Hb_006649_050 Hb_000291_050 Hb_000291_050 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_005496_130 Hb_005496_130 Hb_002725_120--Hb_005496_130 Hb_000165_250 Hb_000165_250 Hb_002725_120--Hb_000165_250 Hb_044728_010 Hb_044728_010 Hb_009767_110--Hb_044728_010 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470 Hb_006649_050--Hb_000165_250 Hb_004225_050 Hb_004225_050 Hb_006649_050--Hb_004225_050 Hb_006649_050--Hb_001198_100 Hb_006649_050--Hb_000291_050 Hb_005779_080 Hb_005779_080 Hb_000291_050--Hb_005779_080 Hb_000291_050--Hb_000165_250 Hb_000291_050--Hb_005496_130 Hb_001004_060 Hb_001004_060 Hb_000291_050--Hb_001004_060 Hb_000227_120 Hb_000227_120 Hb_003142_020--Hb_000227_120 Hb_001007_060 Hb_001007_060 Hb_003142_020--Hb_001007_060 Hb_003291_010 Hb_003291_010 Hb_003142_020--Hb_003291_010 Hb_003106_060 Hb_003106_060 Hb_003142_020--Hb_003106_060 Hb_003142_020--Hb_009767_110 Hb_005496_130--Hb_008554_130 Hb_005496_130--Hb_000165_250 Hb_005496_130--Hb_009767_110 Hb_000029_050 Hb_000029_050 Hb_005496_130--Hb_000029_050 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.94951 3.99157 2.046 2.08945 3.40603 4.81262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.59474 4.61313 5.89081 2.43194 4.85969

CAGE analysis