Hb_002728_070

Information

Type -
Description -
Location Contig2728: 52229-58399
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09370g
description oxidoreductase family protein
nr
ID XP_012091100.1
description PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
swissprot
ID A7RK30
description Quinone oxidoreductase-like protein 2 homolog OS=Nematostella vectensis GN=v1g238856 PE=3 SV=1
trembl
ID A0A067JCT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03288 PE=4 SV=1
Gene Ontology
ID GO:0005777
description quinone oxidoreductase-like protein 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28496: 52292-58372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002728_070 0.0 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
2 Hb_000025_470 0.0455729451 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
3 Hb_054865_120 0.0646382857 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
4 Hb_000058_100 0.0722960454 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
5 Hb_000329_140 0.0735020007 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
6 Hb_027472_150 0.0753796409 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
7 Hb_004310_130 0.0766473032 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
8 Hb_000922_410 0.0775726879 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
9 Hb_008748_040 0.0801408082 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
10 Hb_003125_160 0.081125139 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
11 Hb_000638_120 0.0822307496 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
12 Hb_000212_330 0.0848782446 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003058_040 0.0858013476 - - rotamase, putative [Ricinus communis]
14 Hb_000521_080 0.0862168128 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
15 Hb_009467_060 0.0874191183 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
16 Hb_001124_160 0.0883409871 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_009545_080 0.0888115706 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
18 Hb_003688_130 0.0905744348 - - phosphoserine phosphatase, putative [Ricinus communis]
19 Hb_001922_170 0.0909961287 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
20 Hb_000086_380 0.0910131889 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002728_070 Hb_002728_070 Hb_000025_470 Hb_000025_470 Hb_002728_070--Hb_000025_470 Hb_054865_120 Hb_054865_120 Hb_002728_070--Hb_054865_120 Hb_000058_100 Hb_000058_100 Hb_002728_070--Hb_000058_100 Hb_000329_140 Hb_000329_140 Hb_002728_070--Hb_000329_140 Hb_027472_150 Hb_027472_150 Hb_002728_070--Hb_027472_150 Hb_004310_130 Hb_004310_130 Hb_002728_070--Hb_004310_130 Hb_008748_040 Hb_008748_040 Hb_000025_470--Hb_008748_040 Hb_000025_470--Hb_054865_120 Hb_011671_040 Hb_011671_040 Hb_000025_470--Hb_011671_040 Hb_000025_470--Hb_000058_100 Hb_003688_130 Hb_003688_130 Hb_000025_470--Hb_003688_130 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_054865_120--Hb_008748_040 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_000076_120 Hb_000076_120 Hb_000058_100--Hb_000076_120 Hb_000058_100--Hb_027472_150 Hb_004055_030 Hb_004055_030 Hb_000058_100--Hb_004055_030 Hb_000058_100--Hb_004310_130 Hb_005306_170 Hb_005306_170 Hb_000329_140--Hb_005306_170 Hb_000272_020 Hb_000272_020 Hb_000329_140--Hb_000272_020 Hb_000365_120 Hb_000365_120 Hb_000329_140--Hb_000365_120 Hb_004097_050 Hb_004097_050 Hb_000329_140--Hb_004097_050 Hb_007632_030 Hb_007632_030 Hb_000329_140--Hb_007632_030 Hb_004970_110 Hb_004970_110 Hb_027472_150--Hb_004970_110 Hb_001579_220 Hb_001579_220 Hb_027472_150--Hb_001579_220 Hb_002473_130 Hb_002473_130 Hb_027472_150--Hb_002473_130 Hb_000086_380 Hb_000086_380 Hb_027472_150--Hb_000086_380 Hb_007218_080 Hb_007218_080 Hb_004310_130--Hb_007218_080 Hb_150360_030 Hb_150360_030 Hb_004310_130--Hb_150360_030 Hb_001369_180 Hb_001369_180 Hb_004310_130--Hb_001369_180 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.6913 18.087 32.7746 32.1249 51.7673 55.8666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.2454 41.6263 30.4532 42.6573 37.4299

CAGE analysis