Hb_002728_080

Information

Type -
Description -
Location Contig2728: 73750-82353
Sequence    

Annotation

kegg
ID rcu:RCOM_0690360
description WD-repeat protein, putative
nr
ID XP_002520897.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q8GYD7
description Autophagy-related protein 18c OS=Arabidopsis thaliana GN=ATG18C PE=2 SV=1
trembl
ID B9S4H8
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0690360 PE=4 SV=1
Gene Ontology
ID GO:0008270
description autophagy-related protein 18c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28498: 74054-74809 , PASA_asmbl_28499: 75818-77493 , PASA_asmbl_28502: 82096-82310 , PASA_asmbl_28503: 82396-82743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002728_080 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_002989_020 0.0575934779 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
3 Hb_007481_010 0.0642735019 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
4 Hb_005797_010 0.0646486568 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
5 Hb_003683_020 0.0648477597 - - serine/threonine protein kinase, putative [Ricinus communis]
6 Hb_004990_010 0.0667544766 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
7 Hb_000046_500 0.0673348846 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
8 Hb_000460_080 0.0678133196 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
9 Hb_011063_050 0.0679489619 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
10 Hb_023313_030 0.0691233433 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010142_020 0.0716701179 - - conserved hypothetical protein [Ricinus communis]
12 Hb_013399_020 0.07219108 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
13 Hb_093458_040 0.072375574 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
14 Hb_000140_290 0.0724588268 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
15 Hb_000352_300 0.0730736583 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
16 Hb_003528_030 0.0736306457 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
17 Hb_010515_020 0.0738392403 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
18 Hb_002849_130 0.0748005533 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
19 Hb_000215_300 0.0748263094 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
20 Hb_001679_050 0.0755468698 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]

Gene co-expression network

sample Hb_002728_080 Hb_002728_080 Hb_002989_020 Hb_002989_020 Hb_002728_080--Hb_002989_020 Hb_007481_010 Hb_007481_010 Hb_002728_080--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_002728_080--Hb_005797_010 Hb_003683_020 Hb_003683_020 Hb_002728_080--Hb_003683_020 Hb_004990_010 Hb_004990_010 Hb_002728_080--Hb_004990_010 Hb_000046_500 Hb_000046_500 Hb_002728_080--Hb_000046_500 Hb_000340_530 Hb_000340_530 Hb_002989_020--Hb_000340_530 Hb_011063_050 Hb_011063_050 Hb_002989_020--Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_002989_020--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_002989_020--Hb_093458_040 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_001679_050 Hb_001679_050 Hb_002989_020--Hb_001679_050 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_000352_300 Hb_000352_300 Hb_007481_010--Hb_000352_300 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_007481_010--Hb_000477_100 Hb_007481_010--Hb_000046_500 Hb_005797_010--Hb_007481_010 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_004102_170 Hb_004102_170 Hb_005797_010--Hb_004102_170 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_000009_400 Hb_000009_400 Hb_005797_010--Hb_000009_400 Hb_012498_010 Hb_012498_010 Hb_003683_020--Hb_012498_010 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_003683_020--Hb_003528_030 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_000260_330 Hb_000260_330 Hb_003683_020--Hb_000260_330 Hb_000260_350 Hb_000260_350 Hb_004990_010--Hb_000260_350 Hb_004990_010--Hb_093458_040 Hb_004990_010--Hb_002989_020 Hb_000487_270 Hb_000487_270 Hb_004990_010--Hb_000487_270 Hb_004990_010--Hb_013399_020 Hb_000948_230 Hb_000948_230 Hb_004990_010--Hb_000948_230 Hb_019181_040 Hb_019181_040 Hb_000046_500--Hb_019181_040 Hb_000046_500--Hb_000477_100 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.90038 12.7145 11.3343 21.0897 12.6848 9.80484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3206 10.0654 10.5373 14.3842 10.7157

CAGE analysis