Hb_002732_020

Information

Type -
Description -
Location Contig2732: 3222-12066
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28521: 8057-8586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002732_020 0.0 - - -
2 Hb_003030_040 0.174453808 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
3 Hb_021943_070 0.2013493093 - - -
4 Hb_003656_150 0.2024525038 - - -
5 Hb_007188_030 0.2060423799 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
6 Hb_031866_050 0.2121278258 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
7 Hb_005107_020 0.2133376774 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
8 Hb_002078_500 0.2160695705 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008096_020 0.2166693613 - - -
10 Hb_001089_080 0.2288970276 - - hypothetical protein glysoja_044047 [Glycine soja]
11 Hb_006995_010 0.2311189731 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
12 Hb_002079_040 0.2313882897 - - hypothetical protein VITISV_018542 [Vitis vinifera]
13 Hb_006198_090 0.234791489 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
14 Hb_114079_010 0.2351273632 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
15 Hb_002815_050 0.236025489 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
16 Hb_162090_010 0.2374529687 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
17 Hb_001579_260 0.2389861518 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
18 Hb_108227_010 0.2442954336 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
19 Hb_012675_080 0.2450693126 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
20 Hb_075745_010 0.2455604687 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002732_020 Hb_002732_020 Hb_003030_040 Hb_003030_040 Hb_002732_020--Hb_003030_040 Hb_021943_070 Hb_021943_070 Hb_002732_020--Hb_021943_070 Hb_003656_150 Hb_003656_150 Hb_002732_020--Hb_003656_150 Hb_007188_030 Hb_007188_030 Hb_002732_020--Hb_007188_030 Hb_031866_050 Hb_031866_050 Hb_002732_020--Hb_031866_050 Hb_005107_020 Hb_005107_020 Hb_002732_020--Hb_005107_020 Hb_002815_050 Hb_002815_050 Hb_003030_040--Hb_002815_050 Hb_003030_040--Hb_031866_050 Hb_003030_040--Hb_007188_030 Hb_003030_040--Hb_003656_150 Hb_003030_040--Hb_005107_020 Hb_005679_070 Hb_005679_070 Hb_003030_040--Hb_005679_070 Hb_008096_020 Hb_008096_020 Hb_021943_070--Hb_008096_020 Hb_002972_060 Hb_002972_060 Hb_021943_070--Hb_002972_060 Hb_103093_010 Hb_103093_010 Hb_021943_070--Hb_103093_010 Hb_001089_080 Hb_001089_080 Hb_021943_070--Hb_001089_080 Hb_000084_130 Hb_000084_130 Hb_021943_070--Hb_000084_130 Hb_006995_010 Hb_006995_010 Hb_003656_150--Hb_006995_010 Hb_003656_150--Hb_007188_030 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_006198_090 Hb_006198_090 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_007188_030--Hb_002815_050 Hb_007188_030--Hb_006198_090 Hb_177103_010 Hb_177103_010 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_005679_070 Hb_007447_020 Hb_007447_020 Hb_031866_050--Hb_007447_020 Hb_031866_050--Hb_003656_150 Hb_031866_050--Hb_007188_030 Hb_000683_090 Hb_000683_090 Hb_031866_050--Hb_000683_090 Hb_031866_050--Hb_177103_010 Hb_000034_090 Hb_000034_090 Hb_005107_020--Hb_000034_090 Hb_006162_020 Hb_006162_020 Hb_005107_020--Hb_006162_020 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_005107_020--Hb_012675_080 Hb_011200_010 Hb_011200_010 Hb_005107_020--Hb_011200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.676415 2.4513 0 19.1444 0 25.9566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.76814 1.01303 2.24357 0.472115 2.32695

CAGE analysis