Hb_002733_010

Information

Type -
Description -
Location Contig2733: 5986-12860
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002733_010 0.0 - - -
2 Hb_001221_270 0.2357624405 - - -
3 Hb_001913_020 0.2464797854 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002102_020 0.2998170426 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
5 Hb_010174_080 0.3152776042 - - -
6 Hb_120155_010 0.3187005387 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_000062_350 0.3235059783 - - amino acid transporter, putative [Ricinus communis]
8 Hb_010883_200 0.3238504513 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
9 Hb_002471_200 0.3277187808 - - hypothetical protein POPTR_0010s11380g [Populus trichocarpa]
10 Hb_000922_420 0.3280582012 - - glutaredoxin-1, grx1, putative [Ricinus communis]
11 Hb_122408_010 0.3312962243 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001238_050 0.3316131534 - - -
13 Hb_044653_080 0.3334032914 - - Uncharacterized protein TCM_045144 [Theobroma cacao]
14 Hb_001366_120 0.3345375024 - - unknown [Zea mays]
15 Hb_000326_040 0.3390453134 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
16 Hb_011671_170 0.3426487587 - - PREDICTED: protein DYAD [Jatropha curcas]
17 Hb_001606_080 0.3444430707 - - PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X2 [Jatropha curcas]
18 Hb_001300_210 0.3460240789 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
19 Hb_099864_010 0.3475038748 - - Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_004306_070 0.3498295963 - - hypothetical protein 0_18789_01, partial [Pinus taeda]

Gene co-expression network

sample Hb_002733_010 Hb_002733_010 Hb_001221_270 Hb_001221_270 Hb_002733_010--Hb_001221_270 Hb_001913_020 Hb_001913_020 Hb_002733_010--Hb_001913_020 Hb_002102_020 Hb_002102_020 Hb_002733_010--Hb_002102_020 Hb_010174_080 Hb_010174_080 Hb_002733_010--Hb_010174_080 Hb_120155_010 Hb_120155_010 Hb_002733_010--Hb_120155_010 Hb_000062_350 Hb_000062_350 Hb_002733_010--Hb_000062_350 Hb_001221_270--Hb_001913_020 Hb_108706_010 Hb_108706_010 Hb_001221_270--Hb_108706_010 Hb_159921_010 Hb_159921_010 Hb_001221_270--Hb_159921_010 Hb_004079_020 Hb_004079_020 Hb_001221_270--Hb_004079_020 Hb_078897_010 Hb_078897_010 Hb_001221_270--Hb_078897_010 Hb_005656_030 Hb_005656_030 Hb_001913_020--Hb_005656_030 Hb_000413_290 Hb_000413_290 Hb_001913_020--Hb_000413_290 Hb_010712_070 Hb_010712_070 Hb_001913_020--Hb_010712_070 Hb_002157_200 Hb_002157_200 Hb_001913_020--Hb_002157_200 Hb_002102_020--Hb_010174_080 Hb_000856_190 Hb_000856_190 Hb_002102_020--Hb_000856_190 Hb_000818_010 Hb_000818_010 Hb_002102_020--Hb_000818_010 Hb_000025_030 Hb_000025_030 Hb_002102_020--Hb_000025_030 Hb_000019_150 Hb_000019_150 Hb_002102_020--Hb_000019_150 Hb_000479_150 Hb_000479_150 Hb_002102_020--Hb_000479_150 Hb_000326_040 Hb_000326_040 Hb_010174_080--Hb_000326_040 Hb_004800_250 Hb_004800_250 Hb_010174_080--Hb_004800_250 Hb_004586_210 Hb_004586_210 Hb_010174_080--Hb_004586_210 Hb_010174_080--Hb_000856_190 Hb_000215_080 Hb_000215_080 Hb_010174_080--Hb_000215_080 Hb_055384_010 Hb_055384_010 Hb_120155_010--Hb_055384_010 Hb_000125_120 Hb_000125_120 Hb_120155_010--Hb_000125_120 Hb_001277_220 Hb_001277_220 Hb_120155_010--Hb_001277_220 Hb_000059_040 Hb_000059_040 Hb_120155_010--Hb_000059_040 Hb_000200_140 Hb_000200_140 Hb_120155_010--Hb_000200_140 Hb_000548_050 Hb_000548_050 Hb_120155_010--Hb_000548_050 Hb_001847_020 Hb_001847_020 Hb_000062_350--Hb_001847_020 Hb_000926_020 Hb_000926_020 Hb_000062_350--Hb_000926_020 Hb_000576_010 Hb_000576_010 Hb_000062_350--Hb_000576_010 Hb_000123_120 Hb_000123_120 Hb_000062_350--Hb_000123_120 Hb_000317_030 Hb_000317_030 Hb_000062_350--Hb_000317_030 Hb_000175_450 Hb_000175_450 Hb_000062_350--Hb_000175_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.741296 0.354691 1.38651 0 0.12495 0.981192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150505 0.118224 1.57849 0.148487 0

CAGE analysis