Hb_002733_050

Information

Type -
Description -
Location Contig2733: 92665-97345
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002733_050 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_114121_010 0.032950255 - - -
3 Hb_006013_030 0.0518168693 - - -
4 Hb_168909_010 0.0703253398 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
5 Hb_008755_020 0.0945129055 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000280_120 0.1028233259 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
7 Hb_020400_010 0.1070832768 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
8 Hb_179183_010 0.1155685036 - - RALF-LIKE 32 family protein [Populus trichocarpa]
9 Hb_000243_050 0.1256682638 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_000959_370 0.127310626 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
11 Hb_110782_010 0.1353580467 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
12 Hb_138667_010 0.136107265 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
13 Hb_072173_010 0.1380521488 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
14 Hb_056506_080 0.139268481 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
15 Hb_014967_010 0.1471446351 - - -
16 Hb_001301_070 0.147490915 - - -
17 Hb_006274_020 0.1498628171 - - structural constituent of cell wall, putative [Ricinus communis]
18 Hb_006120_160 0.1548458783 - - -
19 Hb_159404_010 0.160167957 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
20 Hb_101034_010 0.1616770901 - - -

Gene co-expression network

sample Hb_002733_050 Hb_002733_050 Hb_114121_010 Hb_114121_010 Hb_002733_050--Hb_114121_010 Hb_006013_030 Hb_006013_030 Hb_002733_050--Hb_006013_030 Hb_168909_010 Hb_168909_010 Hb_002733_050--Hb_168909_010 Hb_008755_020 Hb_008755_020 Hb_002733_050--Hb_008755_020 Hb_000280_120 Hb_000280_120 Hb_002733_050--Hb_000280_120 Hb_020400_010 Hb_020400_010 Hb_002733_050--Hb_020400_010 Hb_114121_010--Hb_168909_010 Hb_114121_010--Hb_008755_020 Hb_179183_010 Hb_179183_010 Hb_114121_010--Hb_179183_010 Hb_114121_010--Hb_006013_030 Hb_114121_010--Hb_000280_120 Hb_000959_370 Hb_000959_370 Hb_006013_030--Hb_000959_370 Hb_006013_030--Hb_000280_120 Hb_006013_030--Hb_168909_010 Hb_006013_030--Hb_020400_010 Hb_168909_010--Hb_000280_120 Hb_000243_050 Hb_000243_050 Hb_168909_010--Hb_000243_050 Hb_001301_070 Hb_001301_070 Hb_168909_010--Hb_001301_070 Hb_168909_010--Hb_179183_010 Hb_056506_080 Hb_056506_080 Hb_008755_020--Hb_056506_080 Hb_006120_160 Hb_006120_160 Hb_008755_020--Hb_006120_160 Hb_008755_020--Hb_179183_010 Hb_014967_010 Hb_014967_010 Hb_008755_020--Hb_014967_010 Hb_101034_010 Hb_101034_010 Hb_008755_020--Hb_101034_010 Hb_138667_010 Hb_138667_010 Hb_000280_120--Hb_138667_010 Hb_000280_120--Hb_000243_050 Hb_028872_040 Hb_028872_040 Hb_000280_120--Hb_028872_040 Hb_003938_100 Hb_003938_100 Hb_000280_120--Hb_003938_100 Hb_110782_010 Hb_110782_010 Hb_020400_010--Hb_110782_010 Hb_020400_010--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_020400_010--Hb_159404_010 Hb_020400_010--Hb_008755_020 Hb_020400_010--Hb_114121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00798762 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0102924 0.0185573

CAGE analysis