Hb_002737_020

Information

Type -
Description -
Location Contig2737: 37280-37935
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G012300g
description hypothetical protein
nr
ID ABF50984.1
description metallothionein [Bruguiera gymnorhiza]
swissprot
ID P20830
description Metallothionein-like protein 1 OS=Pisum sativum GN=MTA PE=3 SV=1
trembl
ID A5GZZ9
description Metallothionein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID GO:0046872
description type 2 metallothionein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28571: 37253-37936
cDNA
(Sanger)
(ID:Location)		 003_I19.ab1: 37255-37933 , 015_E19.ab1: 37255-37845 , 022_I01.ab1: 37253-37792 , 036_M12.ab1: 37254-37904

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002737_020 0.0 - - metallothionein [Bruguiera gymnorhiza]
2 Hb_018118_020 0.2049145807 - - unnamed protein product [Vitis vinifera]
3 Hb_000123_020 0.2338298609 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
4 Hb_000123_030 0.2342644563 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_076233_020 0.2524427599 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
6 Hb_097433_020 0.2589227469 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_003772_020 0.2687501187 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
8 Hb_007978_020 0.2710981467 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
9 Hb_055339_010 0.2715220247 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
10 Hb_002326_070 0.2726661008 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
11 Hb_159307_010 0.2729448664 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_049958_010 0.2737664076 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_000574_150 0.2784112897 - - PREDICTED: protein SRG1-like [Jatropha curcas]
14 Hb_000334_200 0.287748399 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_181975_010 0.2880100096 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
16 Hb_001589_070 0.2892098174 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_005715_020 0.292608435 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
18 Hb_048103_010 0.2929731332 - - -
19 Hb_080147_080 0.2981020712 - - peroxiredoxin, putative [Ricinus communis]
20 Hb_059641_010 0.2984200894 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_002737_020 Hb_002737_020 Hb_018118_020 Hb_018118_020 Hb_002737_020--Hb_018118_020 Hb_000123_020 Hb_000123_020 Hb_002737_020--Hb_000123_020 Hb_000123_030 Hb_000123_030 Hb_002737_020--Hb_000123_030 Hb_076233_020 Hb_076233_020 Hb_002737_020--Hb_076233_020 Hb_097433_020 Hb_097433_020 Hb_002737_020--Hb_097433_020 Hb_003772_020 Hb_003772_020 Hb_002737_020--Hb_003772_020 Hb_159307_010 Hb_159307_010 Hb_018118_020--Hb_159307_010 Hb_002370_040 Hb_002370_040 Hb_018118_020--Hb_002370_040 Hb_005715_020 Hb_005715_020 Hb_018118_020--Hb_005715_020 Hb_116638_010 Hb_116638_010 Hb_018118_020--Hb_116638_010 Hb_084470_010 Hb_084470_010 Hb_018118_020--Hb_084470_010 Hb_000123_020--Hb_000123_030 Hb_000123_020--Hb_018118_020 Hb_007846_040 Hb_007846_040 Hb_000123_020--Hb_007846_040 Hb_006913_050 Hb_006913_050 Hb_000123_020--Hb_006913_050 Hb_059641_010 Hb_059641_010 Hb_000123_020--Hb_059641_010 Hb_003854_020 Hb_003854_020 Hb_000123_030--Hb_003854_020 Hb_000123_030--Hb_059641_010 Hb_022880_020 Hb_022880_020 Hb_000123_030--Hb_022880_020 Hb_049958_010 Hb_049958_010 Hb_000123_030--Hb_049958_010 Hb_002471_020 Hb_002471_020 Hb_000123_030--Hb_002471_020 Hb_000997_010 Hb_000997_010 Hb_076233_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_076233_020--Hb_014361_050 Hb_055339_010 Hb_055339_010 Hb_076233_020--Hb_055339_010 Hb_004570_050 Hb_004570_050 Hb_076233_020--Hb_004570_050 Hb_057247_010 Hb_057247_010 Hb_076233_020--Hb_057247_010 Hb_169329_010 Hb_169329_010 Hb_076233_020--Hb_169329_010 Hb_057217_010 Hb_057217_010 Hb_097433_020--Hb_057217_010 Hb_097433_020--Hb_005715_020 Hb_000334_200 Hb_000334_200 Hb_097433_020--Hb_000334_200 Hb_097433_020--Hb_018118_020 Hb_050495_010 Hb_050495_010 Hb_097433_020--Hb_050495_010 Hb_000014_130 Hb_000014_130 Hb_003772_020--Hb_000014_130 Hb_032018_010 Hb_032018_010 Hb_003772_020--Hb_032018_010 Hb_000062_500 Hb_000062_500 Hb_003772_020--Hb_000062_500 Hb_007978_020 Hb_007978_020 Hb_003772_020--Hb_007978_020 Hb_041237_010 Hb_041237_010 Hb_003772_020--Hb_041237_010 Hb_010447_020 Hb_010447_020 Hb_003772_020--Hb_010447_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1434.64 2303.2 479.569 599.284 130.578 2166.87
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.331706 0.521319 1.50544 12.6264 94.2073

CAGE analysis