Hb_002739_020

Information

Type -
Description -
Location Contig2739: 16217-23592
Sequence    

Annotation

kegg
ID rcu:RCOM_1605130
description utp-glucose-1-phosphate uridylyltransferase, putative (EC:2.7.7.9)
nr
ID XP_012074723.1
description PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
swissprot
ID Q9SDX3
description UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1
trembl
ID A0A067KU12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10502 PE=4 SV=1
Gene Ontology
ID GO:0003983
description utp--glucose-1-phosphate uridylyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28623: 16305-23738 , PASA_asmbl_28624: 20596-21830
cDNA
(Sanger)
(ID:Location)		 001_I11.ab1: 16321-20382 , 014_H02.ab1: 16321-20385

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_020 0.0 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
2 Hb_000261_230 0.0847031184 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
3 Hb_003376_330 0.0872095413 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
4 Hb_007336_010 0.0883073735 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
5 Hb_028512_020 0.0908698401 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
6 Hb_004117_110 0.0910395618 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
7 Hb_001492_020 0.0946564349 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
8 Hb_001860_030 0.0951568939 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
9 Hb_002445_060 0.0962386652 - - arf gtpase-activating protein, putative [Ricinus communis]
10 Hb_000062_270 0.0972871019 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
11 Hb_000130_410 0.0987277848 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
12 Hb_000227_090 0.0991914332 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
13 Hb_002235_170 0.0994042491 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
14 Hb_005797_010 0.1001935248 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
15 Hb_023313_030 0.1004094018 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000022_050 0.1007989757 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
17 Hb_000120_170 0.1015826115 - - selenoprotein [Populus trichocarpa]
18 Hb_006588_170 0.1038122408 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
19 Hb_001541_230 0.1052166499 - - unnamed protein product [Vitis vinifera]
20 Hb_001123_030 0.1052763821 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_002739_020 Hb_002739_020 Hb_000261_230 Hb_000261_230 Hb_002739_020--Hb_000261_230 Hb_003376_330 Hb_003376_330 Hb_002739_020--Hb_003376_330 Hb_007336_010 Hb_007336_010 Hb_002739_020--Hb_007336_010 Hb_028512_020 Hb_028512_020 Hb_002739_020--Hb_028512_020 Hb_004117_110 Hb_004117_110 Hb_002739_020--Hb_004117_110 Hb_001492_020 Hb_001492_020 Hb_002739_020--Hb_001492_020 Hb_000022_050 Hb_000022_050 Hb_000261_230--Hb_000022_050 Hb_003897_040 Hb_003897_040 Hb_000261_230--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000261_230--Hb_032990_010 Hb_005460_050 Hb_005460_050 Hb_000261_230--Hb_005460_050 Hb_005797_010 Hb_005797_010 Hb_000261_230--Hb_005797_010 Hb_000270_490 Hb_000270_490 Hb_003376_330--Hb_000270_490 Hb_073973_100 Hb_073973_100 Hb_003376_330--Hb_073973_100 Hb_023732_030 Hb_023732_030 Hb_003376_330--Hb_023732_030 Hb_002232_410 Hb_002232_410 Hb_003376_330--Hb_002232_410 Hb_026198_070 Hb_026198_070 Hb_003376_330--Hb_026198_070 Hb_003693_070 Hb_003693_070 Hb_003376_330--Hb_003693_070 Hb_007336_010--Hb_001492_020 Hb_002235_170 Hb_002235_170 Hb_007336_010--Hb_002235_170 Hb_001205_240 Hb_001205_240 Hb_007336_010--Hb_001205_240 Hb_000363_240 Hb_000363_240 Hb_007336_010--Hb_000363_240 Hb_000327_270 Hb_000327_270 Hb_007336_010--Hb_000327_270 Hb_001511_240 Hb_001511_240 Hb_007336_010--Hb_001511_240 Hb_002026_210 Hb_002026_210 Hb_028512_020--Hb_002026_210 Hb_000260_330 Hb_000260_330 Hb_028512_020--Hb_000260_330 Hb_004109_230 Hb_004109_230 Hb_028512_020--Hb_004109_230 Hb_001860_030 Hb_001860_030 Hb_028512_020--Hb_001860_030 Hb_000923_010 Hb_000923_010 Hb_028512_020--Hb_000923_010 Hb_014361_070 Hb_014361_070 Hb_028512_020--Hb_014361_070 Hb_000028_370 Hb_000028_370 Hb_004117_110--Hb_000028_370 Hb_013738_020 Hb_013738_020 Hb_004117_110--Hb_013738_020 Hb_000215_320 Hb_000215_320 Hb_004117_110--Hb_000215_320 Hb_004117_110--Hb_002026_210 Hb_168978_010 Hb_168978_010 Hb_004117_110--Hb_168978_010 Hb_002110_080 Hb_002110_080 Hb_004117_110--Hb_002110_080 Hb_001492_020--Hb_002235_170 Hb_002213_070 Hb_002213_070 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_000120_060 Hb_000120_060 Hb_001492_020--Hb_000120_060 Hb_001314_010 Hb_001314_010 Hb_001492_020--Hb_001314_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.301 116.252 83.8876 171.181 102.767 128.003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
180.88 85.3018 52.9523 114.617 87.9345

CAGE analysis