Hb_002739_040

Information

Type -
Description -
Location Contig2739: 33828-39234
Sequence    

Annotation

kegg
ID rcu:RCOM_0113200
description NADP-specific isocitrate dehydrogenase, putative (EC:1.1.1.42)
nr
ID XP_012074735.1
description PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
swissprot
ID P50217
description Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1
trembl
ID A0A067KV94
description Isocitrate dehydrogenase [NADP] OS=Jatropha curcas GN=JCGZ_10511 PE=3 SV=1
Gene Ontology
ID GO:0000287
description isocitrate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28626: 33867-39093 , PASA_asmbl_28627: 33853-39097 , PASA_asmbl_28628: 37093-37636 , PASA_asmbl_28629: 34445-34583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_040 0.0 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
2 Hb_000003_020 0.1000763298 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
3 Hb_004324_030 0.1008697129 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
4 Hb_003142_060 0.1276145513 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
5 Hb_004079_100 0.1332271008 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
6 Hb_026549_050 0.1339333923 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
7 Hb_000834_040 0.1339702854 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
8 Hb_000116_240 0.1353229765 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
9 Hb_000186_290 0.1359701786 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
10 Hb_002307_010 0.1381868838 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
11 Hb_004958_020 0.1408692333 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
12 Hb_003106_230 0.1439559415 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
13 Hb_022250_160 0.1444713059 - - respiratory burst oxidase A [Manihot esculenta]
14 Hb_078081_010 0.1444903877 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
15 Hb_008566_080 0.1486746824 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
16 Hb_002527_060 0.1494325594 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
17 Hb_008695_150 0.1494785784 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
18 Hb_000216_050 0.1501920086 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
19 Hb_007416_290 0.150820738 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
20 Hb_042509_020 0.1518250061 - - hypothetical protein JCGZ_19555 [Jatropha curcas]

Gene co-expression network

sample Hb_002739_040 Hb_002739_040 Hb_000003_020 Hb_000003_020 Hb_002739_040--Hb_000003_020 Hb_004324_030 Hb_004324_030 Hb_002739_040--Hb_004324_030 Hb_003142_060 Hb_003142_060 Hb_002739_040--Hb_003142_060 Hb_004079_100 Hb_004079_100 Hb_002739_040--Hb_004079_100 Hb_026549_050 Hb_026549_050 Hb_002739_040--Hb_026549_050 Hb_000834_040 Hb_000834_040 Hb_002739_040--Hb_000834_040 Hb_000003_020--Hb_003142_060 Hb_000003_020--Hb_004324_030 Hb_000003_020--Hb_004079_100 Hb_000085_380 Hb_000085_380 Hb_000003_020--Hb_000085_380 Hb_003106_230 Hb_003106_230 Hb_000003_020--Hb_003106_230 Hb_042509_020 Hb_042509_020 Hb_004324_030--Hb_042509_020 Hb_004324_030--Hb_026549_050 Hb_000181_210 Hb_000181_210 Hb_004324_030--Hb_000181_210 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_003142_060--Hb_000834_040 Hb_003142_060--Hb_003106_230 Hb_001008_110 Hb_001008_110 Hb_003142_060--Hb_001008_110 Hb_042202_020 Hb_042202_020 Hb_003142_060--Hb_042202_020 Hb_000024_130 Hb_000024_130 Hb_003142_060--Hb_000024_130 Hb_022250_160 Hb_022250_160 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_008566_080 Hb_008566_080 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_000594_160 Hb_000594_160 Hb_004079_100--Hb_000594_160 Hb_026549_050--Hb_000181_210 Hb_001922_060 Hb_001922_060 Hb_026549_050--Hb_001922_060 Hb_000002_360 Hb_000002_360 Hb_026549_050--Hb_000002_360 Hb_026549_050--Hb_000003_020 Hb_000832_280 Hb_000832_280 Hb_026549_050--Hb_000832_280 Hb_003562_030 Hb_003562_030 Hb_000834_040--Hb_003562_030 Hb_002307_010 Hb_002307_010 Hb_000834_040--Hb_002307_010 Hb_000834_040--Hb_004324_030 Hb_000834_040--Hb_042509_020 Hb_000834_040--Hb_000003_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6069 54.833 79.2241 157.357 2.85805 3.86877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.133 15.5891 2.23213 168.853 66.8632

CAGE analysis