Hb_002739_070

Information

Type -
Description -
Location Contig2739: 78024-79985
Sequence    

Annotation

kegg
ID csv:101216119
description glutamate decarboxylase 1-like
nr
ID KJB15306.1
description hypothetical protein B456_002G169900 [Gossypium raimondii]
swissprot
ID Q8PXA5
description L-tyrosine decarboxylase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=mfnA PE=3 SV=1
trembl
ID A0A0D2QEE7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G169900 PE=4 SV=1
Gene Ontology
ID GO:0004351
description glutamate decarboxylase 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28634: 61097-79966
cDNA
(Sanger)
(ID:Location)		 046_D01.ab1: 78463-79616 , 049_P01.ab1: 78463-79476

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_070 0.0 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
2 Hb_002475_130 0.1341308413 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
3 Hb_015882_020 0.1423079152 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_062229_010 0.142593859 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_000522_130 0.146395806 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
6 Hb_001921_010 0.1474982656 - - ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_006618_020 0.1495932654 - - Vacuolar-processing enzyme precursor [Ricinus communis]
8 Hb_000808_160 0.1498777305 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
9 Hb_000236_120 0.1557157077 - - -
10 Hb_017604_020 0.1581917156 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
11 Hb_004166_010 0.1587031157 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
12 Hb_000544_020 0.1591209839 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_000532_130 0.1598206868 - - hypothetical protein [Anabaena sp. PCC 7108]
14 Hb_000369_070 0.1598883258 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_001345_030 0.1639603989 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
16 Hb_001391_100 0.1661380286 - - AMP dependent ligase, putative [Ricinus communis]
17 Hb_001408_150 0.1683170993 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
18 Hb_000061_100 0.1693066243 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
19 Hb_004106_010 0.1697701681 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
20 Hb_158696_010 0.1703058831 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]

Gene co-expression network

sample Hb_002739_070 Hb_002739_070 Hb_002475_130 Hb_002475_130 Hb_002739_070--Hb_002475_130 Hb_015882_020 Hb_015882_020 Hb_002739_070--Hb_015882_020 Hb_062229_010 Hb_062229_010 Hb_002739_070--Hb_062229_010 Hb_000522_130 Hb_000522_130 Hb_002739_070--Hb_000522_130 Hb_001921_010 Hb_001921_010 Hb_002739_070--Hb_001921_010 Hb_006618_020 Hb_006618_020 Hb_002739_070--Hb_006618_020 Hb_002475_130--Hb_001921_010 Hb_007259_020 Hb_007259_020 Hb_002475_130--Hb_007259_020 Hb_002232_050 Hb_002232_050 Hb_002475_130--Hb_002232_050 Hb_000532_130 Hb_000532_130 Hb_002475_130--Hb_000532_130 Hb_000233_100 Hb_000233_100 Hb_002475_130--Hb_000233_100 Hb_000705_130 Hb_000705_130 Hb_015882_020--Hb_000705_130 Hb_033312_090 Hb_033312_090 Hb_015882_020--Hb_033312_090 Hb_015882_020--Hb_000522_130 Hb_000027_060 Hb_000027_060 Hb_015882_020--Hb_000027_060 Hb_001534_150 Hb_001534_150 Hb_015882_020--Hb_001534_150 Hb_004030_070 Hb_004030_070 Hb_015882_020--Hb_004030_070 Hb_001391_100 Hb_001391_100 Hb_062229_010--Hb_001391_100 Hb_061908_020 Hb_061908_020 Hb_062229_010--Hb_061908_020 Hb_004605_020 Hb_004605_020 Hb_062229_010--Hb_004605_020 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_010261_030 Hb_010261_030 Hb_062229_010--Hb_010261_030 Hb_000522_130--Hb_033312_090 Hb_012098_180 Hb_012098_180 Hb_000522_130--Hb_012098_180 Hb_001538_050 Hb_001538_050 Hb_000522_130--Hb_001538_050 Hb_003914_050 Hb_003914_050 Hb_000522_130--Hb_003914_050 Hb_008040_060 Hb_008040_060 Hb_000522_130--Hb_008040_060 Hb_000522_130--Hb_000705_130 Hb_010080_020 Hb_010080_020 Hb_001921_010--Hb_010080_020 Hb_002218_070 Hb_002218_070 Hb_001921_010--Hb_002218_070 Hb_008175_030 Hb_008175_030 Hb_001921_010--Hb_008175_030 Hb_000819_010 Hb_000819_010 Hb_001921_010--Hb_000819_010 Hb_000333_120 Hb_000333_120 Hb_001921_010--Hb_000333_120 Hb_006618_020--Hb_004605_020 Hb_006618_020--Hb_033312_090 Hb_006618_020--Hb_061908_020 Hb_006618_020--Hb_000522_130 Hb_002006_060 Hb_002006_060 Hb_006618_020--Hb_002006_060 Hb_000369_070 Hb_000369_070 Hb_006618_020--Hb_000369_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.9434 1047.07 232.1 272.961 43.6231 56.2525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.555303 0.655312 0.593039 245.331 291.023

CAGE analysis