Hb_002739_080

Information

Type -
Description -
Location Contig2739: 84530-95400
Sequence    

Annotation

kegg
ID rcu:RCOM_1444740
description cystathionine beta-lyase, putative (EC:4.4.1.1)
nr
ID XP_002512818.1
description cystathionine beta-lyase, putative [Ricinus communis]
swissprot
ID P53780
description Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1
trembl
ID B9RGV9
description Cystathionine beta-lyase, putative OS=Ricinus communis GN=RCOM_1444740 PE=3 SV=1
Gene Ontology
ID GO:0004121
description cystathionine beta- chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28636: 84575-95378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_080 0.0 - - cystathionine beta-lyase, putative [Ricinus communis]
2 Hb_000372_040 0.0725967356 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_002475_050 0.0855180714 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
4 Hb_003216_110 0.0979724887 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
5 Hb_002048_090 0.0993983763 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
6 Hb_079326_010 0.1032841333 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
7 Hb_002159_040 0.1062935241 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
8 Hb_004881_050 0.1066116561 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
9 Hb_001268_210 0.1079177789 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000244_240 0.1090139518 - - ATP binding protein, putative [Ricinus communis]
11 Hb_009913_050 0.1091117927 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
12 Hb_000181_310 0.1108112778 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
13 Hb_007668_020 0.1108838054 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
14 Hb_000318_140 0.1147448873 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
15 Hb_006114_020 0.114756396 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002986_050 0.1149021703 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
17 Hb_001341_050 0.1150033922 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
18 Hb_005000_270 0.1154323691 - - unnamed protein product [Vitis vinifera]
19 Hb_002942_080 0.1174981968 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
20 Hb_000134_360 0.1178087476 - - PREDICTED: protein gar2 [Jatropha curcas]

Gene co-expression network

sample Hb_002739_080 Hb_002739_080 Hb_000372_040 Hb_000372_040 Hb_002739_080--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_002739_080--Hb_002475_050 Hb_003216_110 Hb_003216_110 Hb_002739_080--Hb_003216_110 Hb_002048_090 Hb_002048_090 Hb_002739_080--Hb_002048_090 Hb_079326_010 Hb_079326_010 Hb_002739_080--Hb_079326_010 Hb_002159_040 Hb_002159_040 Hb_002739_080--Hb_002159_040 Hb_000372_040--Hb_002475_050 Hb_004881_050 Hb_004881_050 Hb_000372_040--Hb_004881_050 Hb_000372_040--Hb_079326_010 Hb_005000_270 Hb_005000_270 Hb_000372_040--Hb_005000_270 Hb_000134_360 Hb_000134_360 Hb_000372_040--Hb_000134_360 Hb_002475_050--Hb_079326_010 Hb_002986_050 Hb_002986_050 Hb_002475_050--Hb_002986_050 Hb_002475_050--Hb_004881_050 Hb_002475_050--Hb_005000_270 Hb_000230_370 Hb_000230_370 Hb_003216_110--Hb_000230_370 Hb_001408_090 Hb_001408_090 Hb_003216_110--Hb_001408_090 Hb_002025_140 Hb_002025_140 Hb_003216_110--Hb_002025_140 Hb_001969_040 Hb_001969_040 Hb_003216_110--Hb_001969_040 Hb_005028_010 Hb_005028_010 Hb_003216_110--Hb_005028_010 Hb_003216_110--Hb_002986_050 Hb_001396_290 Hb_001396_290 Hb_002048_090--Hb_001396_290 Hb_073171_080 Hb_073171_080 Hb_002048_090--Hb_073171_080 Hb_009913_050 Hb_009913_050 Hb_002048_090--Hb_009913_050 Hb_000244_240 Hb_000244_240 Hb_002048_090--Hb_000244_240 Hb_004225_130 Hb_004225_130 Hb_002048_090--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002048_090--Hb_002883_010 Hb_079326_010--Hb_004881_050 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_079326_010--Hb_000134_360 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_004143_070 Hb_004143_070 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.596 35.4946 42.6475 32.5184 128.83 226.408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.7339 20.9876 30.9919 29.8506 31.4213

CAGE analysis