Hb_002739_100

Information

Type transcription factor
Description TF Family: FAR1
Location Contig2739: 104445-108678
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01870g
description POPTRDRAFT_1082015; hypothetical protein
nr
ID XP_012074747.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A067KLA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10520 PE=4 SV=1
Gene Ontology
ID GO:0006355
description protein far-red elongated hypocotyl 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28637: 104854-108543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_100 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
2 Hb_000876_070 0.0373751995 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_005779_060 0.0506915113 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
4 Hb_007691_030 0.0515487706 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
5 Hb_001242_060 0.0610767118 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
6 Hb_000928_210 0.0627269796 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
7 Hb_031527_040 0.0639917958 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
8 Hb_032202_190 0.0642653764 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
9 Hb_017358_030 0.0661366406 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
10 Hb_005618_170 0.0665383526 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
11 Hb_001552_020 0.066795681 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
12 Hb_005725_250 0.06792427 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
13 Hb_004724_080 0.0679392118 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000563_320 0.0691101616 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
15 Hb_002046_180 0.0698091748 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
16 Hb_009767_110 0.0702435796 - - -
17 Hb_002888_030 0.0706722903 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_000016_250 0.0707660559 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
19 Hb_005463_100 0.0709933331 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
20 Hb_002105_040 0.0716057241 - - -

Gene co-expression network

sample Hb_002739_100 Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_002739_100--Hb_000876_070 Hb_005779_060 Hb_005779_060 Hb_002739_100--Hb_005779_060 Hb_007691_030 Hb_007691_030 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_005779_060--Hb_002046_180 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180 Hb_001242_060--Hb_031527_040 Hb_000757_060 Hb_000757_060 Hb_001242_060--Hb_000757_060 Hb_001242_060--Hb_000016_250 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_000563_320 Hb_000563_320 Hb_001242_060--Hb_000563_320 Hb_001242_060--Hb_005779_060 Hb_000928_210--Hb_000876_070 Hb_004254_120 Hb_004254_120 Hb_000928_210--Hb_004254_120 Hb_004724_080 Hb_004724_080 Hb_000928_210--Hb_004724_080 Hb_000206_210 Hb_000206_210 Hb_000928_210--Hb_000206_210 Hb_000928_210--Hb_002046_180 Hb_031527_040--Hb_000563_320 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8891 9.02455 6.05395 8.04049 12.8321 10.7506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1177 16.6642 15.4444 7.50925 8.62432

CAGE analysis