Hb_002739_110

Information

Type -
Description -
Location Contig2739: 109915-111876
Sequence    

Annotation

kegg
ID cit:102617850
description ribosomal RNA processing protein 1 homolog
nr
ID XP_012074750.1
description PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
swissprot
ID Q9Y7M6
description Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC9B6.07 PE=3 SV=1
trembl
ID A0A067KVA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10521 PE=4 SV=1
Gene Ontology
ID GO:0030688
description ribosomal rna processing protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_110 0.0 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
2 Hb_001396_230 0.105436113 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
3 Hb_001004_040 0.1107394897 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000380_180 0.1246011659 - - kinase, putative [Ricinus communis]
5 Hb_152439_020 0.1297743217 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
6 Hb_000249_130 0.1304068664 - - hypothetical protein RCOM_0254640 [Ricinus communis]
7 Hb_008085_040 0.1342261099 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
8 Hb_000025_480 0.136724108 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
9 Hb_024952_010 0.1388881841 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
10 Hb_000157_010 0.1390264658 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
11 Hb_004306_060 0.139189954 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
12 Hb_003497_030 0.1408405316 - - ADP-ribosylation factor, putative [Ricinus communis]
13 Hb_000576_040 0.1443834294 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
14 Hb_004800_160 0.1527939385 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
15 Hb_001153_220 0.1555198135 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
16 Hb_143629_090 0.1557383462 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
17 Hb_001959_160 0.1561690413 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
18 Hb_024973_010 0.1562152229 - - PREDICTED: uncharacterized protein LOC105642097 isoform X2 [Jatropha curcas]
19 Hb_000193_250 0.1569244614 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
20 Hb_005779_100 0.1603288633 - - DNAJ [Theobroma cacao]

Gene co-expression network

sample Hb_002739_110 Hb_002739_110 Hb_001396_230 Hb_001396_230 Hb_002739_110--Hb_001396_230 Hb_001004_040 Hb_001004_040 Hb_002739_110--Hb_001004_040 Hb_000380_180 Hb_000380_180 Hb_002739_110--Hb_000380_180 Hb_152439_020 Hb_152439_020 Hb_002739_110--Hb_152439_020 Hb_000249_130 Hb_000249_130 Hb_002739_110--Hb_000249_130 Hb_008085_040 Hb_008085_040 Hb_002739_110--Hb_008085_040 Hb_005779_100 Hb_005779_100 Hb_001396_230--Hb_005779_100 Hb_024952_010 Hb_024952_010 Hb_001396_230--Hb_024952_010 Hb_001396_230--Hb_008085_040 Hb_001606_070 Hb_001606_070 Hb_001396_230--Hb_001606_070 Hb_003030_080 Hb_003030_080 Hb_001396_230--Hb_003030_080 Hb_150651_050 Hb_150651_050 Hb_001004_040--Hb_150651_050 Hb_001004_040--Hb_000380_180 Hb_085863_020 Hb_085863_020 Hb_001004_040--Hb_085863_020 Hb_000025_480 Hb_000025_480 Hb_001004_040--Hb_000025_480 Hb_001004_040--Hb_000249_130 Hb_003497_030 Hb_003497_030 Hb_000380_180--Hb_003497_030 Hb_001767_010 Hb_001767_010 Hb_000380_180--Hb_001767_010 Hb_000427_030 Hb_000427_030 Hb_000380_180--Hb_000427_030 Hb_000260_060 Hb_000260_060 Hb_000380_180--Hb_000260_060 Hb_000380_180--Hb_000249_130 Hb_000193_250 Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_004306_060 Hb_004306_060 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_000249_130--Hb_143629_090 Hb_000249_130--Hb_003030_080 Hb_000249_130--Hb_003497_030 Hb_000249_130--Hb_024952_010 Hb_000249_130--Hb_001606_070 Hb_001959_160 Hb_001959_160 Hb_008085_040--Hb_001959_160 Hb_007229_060 Hb_007229_060 Hb_008085_040--Hb_007229_060 Hb_000223_150 Hb_000223_150 Hb_008085_040--Hb_000223_150 Hb_000156_100 Hb_000156_100 Hb_008085_040--Hb_000156_100 Hb_000861_040 Hb_000861_040 Hb_008085_040--Hb_000861_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.55117 0.356545 0.188925 0.277502 2.3335 4.36098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10037 2.62196 9.55396 1.06286 0.508954

CAGE analysis