Hb_002739_120

Information

Type -
Description -
Location Contig2739: 112454-124861
Sequence    

Annotation

kegg
ID rcu:RCOM_0112080
description zinc finger protein, putative
nr
ID XP_012074752.1
description PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
swissprot
ID P53303
description Zinc finger protein ZPR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZPR1 PE=1 SV=1
trembl
ID A0A067KU25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10522 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger protein zpr1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28639: 112460-125109 , PASA_asmbl_28641: 116143-116331 , PASA_asmbl_28642: 117682-117971 , PASA_asmbl_28643: 120013-120265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_120 0.0 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
2 Hb_001250_050 0.068485757 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
3 Hb_001085_080 0.0776074086 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
4 Hb_003777_030 0.0814116514 - - Exocyst complex component, putative [Ricinus communis]
5 Hb_000418_020 0.0817246816 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
6 Hb_000197_180 0.0820561752 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
7 Hb_001009_150 0.082458819 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
8 Hb_021977_010 0.0850072844 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
9 Hb_010407_030 0.0851986203 - - PREDICTED: casein kinase I-like [Jatropha curcas]
10 Hb_002687_200 0.0919393114 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001811_170 0.0925316889 - - dynamin, putative [Ricinus communis]
12 Hb_000753_160 0.0928126856 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
13 Hb_158845_060 0.093153779 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
14 Hb_060094_010 0.0939736297 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
15 Hb_000203_270 0.094042461 - - alpha-xylosidase, putative [Ricinus communis]
16 Hb_001878_060 0.0943908324 transcription factor TF Family: G2-like hypothetical protein POPTR_0007s15110g [Populus trichocarpa]
17 Hb_018845_010 0.0952564921 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
18 Hb_001097_040 0.096118085 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
19 Hb_004218_130 0.0973057049 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
20 Hb_003964_110 0.0973282827 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002739_120 Hb_002739_120 Hb_001250_050 Hb_001250_050 Hb_002739_120--Hb_001250_050 Hb_001085_080 Hb_001085_080 Hb_002739_120--Hb_001085_080 Hb_003777_030 Hb_003777_030 Hb_002739_120--Hb_003777_030 Hb_000418_020 Hb_000418_020 Hb_002739_120--Hb_000418_020 Hb_000197_180 Hb_000197_180 Hb_002739_120--Hb_000197_180 Hb_001009_150 Hb_001009_150 Hb_002739_120--Hb_001009_150 Hb_001250_050--Hb_003777_030 Hb_002687_180 Hb_002687_180 Hb_001250_050--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_001250_050--Hb_001279_190 Hb_000753_160 Hb_000753_160 Hb_001250_050--Hb_000753_160 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_001097_040 Hb_001097_040 Hb_001085_080--Hb_001097_040 Hb_000579_130 Hb_000579_130 Hb_001085_080--Hb_000579_130 Hb_001558_040 Hb_001558_040 Hb_001085_080--Hb_001558_040 Hb_158845_060 Hb_158845_060 Hb_001085_080--Hb_158845_060 Hb_001811_170 Hb_001811_170 Hb_001085_080--Hb_001811_170 Hb_000665_170 Hb_000665_170 Hb_003777_030--Hb_000665_170 Hb_007545_010 Hb_007545_010 Hb_003777_030--Hb_007545_010 Hb_132082_010 Hb_132082_010 Hb_003777_030--Hb_132082_010 Hb_000815_300 Hb_000815_300 Hb_003777_030--Hb_000815_300 Hb_000256_230 Hb_000256_230 Hb_003777_030--Hb_000256_230 Hb_000418_020--Hb_000256_230 Hb_000418_020--Hb_000665_170 Hb_002687_200 Hb_002687_200 Hb_000418_020--Hb_002687_200 Hb_021576_070 Hb_021576_070 Hb_000418_020--Hb_021576_070 Hb_000418_020--Hb_003777_030 Hb_000853_330 Hb_000853_330 Hb_000197_180--Hb_000853_330 Hb_000979_140 Hb_000979_140 Hb_000197_180--Hb_000979_140 Hb_004375_110 Hb_004375_110 Hb_000197_180--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_000197_180--Hb_060094_010 Hb_002349_030 Hb_002349_030 Hb_000197_180--Hb_002349_030 Hb_010407_030 Hb_010407_030 Hb_001009_150--Hb_010407_030 Hb_001195_420 Hb_001195_420 Hb_001009_150--Hb_001195_420 Hb_000318_040 Hb_000318_040 Hb_001009_150--Hb_000318_040 Hb_006949_060 Hb_006949_060 Hb_001009_150--Hb_006949_060 Hb_028077_020 Hb_028077_020 Hb_001009_150--Hb_028077_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95144 17.6473 19.5396 30.3838 6.29459 6.69238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.29121 5.85799 4.67673 17.4409 15.2069

CAGE analysis