Hb_002739_130

Information

Type -
Description -
Location Contig2739: 126184-131413
Sequence    

Annotation

kegg
ID tcc:TCM_017709
description PRP38 family protein isoform 1
nr
ID XP_011005920.1
description PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9P852
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s07420g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28644: 126206-131406 , PASA_asmbl_28645: 126206-128749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_130 0.0 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
2 Hb_006452_160 0.0573524935 - - structural constituent of ribosome, putative [Ricinus communis]
3 Hb_016734_090 0.0588704033 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
4 Hb_000563_330 0.060241518 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_000661_020 0.0769563564 - - BnaC08g27190D [Brassica napus]
6 Hb_011918_050 0.0805375401 - - -
7 Hb_000679_340 0.0806669406 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
8 Hb_000023_320 0.0826465958 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002157_260 0.0841265158 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
10 Hb_004079_120 0.0851359618 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
11 Hb_005188_060 0.0854905176 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
12 Hb_004631_190 0.0892402303 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
13 Hb_001952_120 0.0892706981 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
14 Hb_005288_080 0.0910412703 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005965_030 0.0913911429 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
16 Hb_001269_200 0.0929261718 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
17 Hb_000963_130 0.0946913552 - - RNA m5u methyltransferase, putative [Ricinus communis]
18 Hb_000230_430 0.0958122555 - - catalytic, putative [Ricinus communis]
19 Hb_000077_010 0.0958999482 - - unnamed protein product [Vitis vinifera]
20 Hb_000922_020 0.0961087239 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002739_130 Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_002739_130--Hb_006452_160 Hb_016734_090 Hb_016734_090 Hb_002739_130--Hb_016734_090 Hb_000563_330 Hb_000563_330 Hb_002739_130--Hb_000563_330 Hb_000661_020 Hb_000661_020 Hb_002739_130--Hb_000661_020 Hb_011918_050 Hb_011918_050 Hb_002739_130--Hb_011918_050 Hb_000679_340 Hb_000679_340 Hb_002739_130--Hb_000679_340 Hb_006452_160--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330 Hb_006452_160--Hb_016734_090 Hb_016734_090--Hb_011918_050 Hb_001269_200 Hb_001269_200 Hb_016734_090--Hb_001269_200 Hb_016734_090--Hb_000563_330 Hb_016734_090--Hb_000661_020 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_003929_140 Hb_003929_140 Hb_000661_020--Hb_003929_140 Hb_004631_190 Hb_004631_190 Hb_000661_020--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_000661_020--Hb_000922_020 Hb_007929_080 Hb_007929_080 Hb_000661_020--Hb_007929_080 Hb_011918_050--Hb_001269_200 Hb_000023_320 Hb_000023_320 Hb_011918_050--Hb_000023_320 Hb_005288_080 Hb_005288_080 Hb_011918_050--Hb_005288_080 Hb_005054_190 Hb_005054_190 Hb_011918_050--Hb_005054_190 Hb_022256_060 Hb_022256_060 Hb_000679_340--Hb_022256_060 Hb_000230_090 Hb_000230_090 Hb_000679_340--Hb_000230_090 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_000679_340--Hb_000922_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.7803 45.5551 50.9403 16.1461 51.9533 37.3041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2225 18.5496 10.9518 19.5099 20.4859

CAGE analysis