Hb_002739_160

Information

Type transcription factor
Description TF Family: G2-like
Location Contig2739: 158723-164716
Sequence    

Annotation

kegg
ID rcu:RCOM_0111710
description transcription factor, putative
nr
ID XP_002528498.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q93WJ9
description Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1
trembl
ID B9SR79
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0111710 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor kan1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28650: 158346-164987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_160 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_030827_080 0.0313138133 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
3 Hb_153180_010 0.0692942555 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
4 Hb_010642_010 0.0701414296 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
5 Hb_008352_020 0.0720685482 - - hypothetical protein [Cecembia lonarensis]
6 Hb_001198_180 0.0809803792 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
7 Hb_001663_090 0.0921752052 - - ribonuclease t2, putative [Ricinus communis]
8 Hb_004324_100 0.0927700854 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_000028_330 0.095609555 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
10 Hb_001562_030 0.0972343535 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
11 Hb_008725_020 0.1018956869 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
12 Hb_003435_040 0.1026775539 - - tonoplast intrinsic protein [Hevea brasiliensis]
13 Hb_029622_090 0.1130272111 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
14 Hb_011355_020 0.1186919513 - - extensin, proline-rich protein, putative [Ricinus communis]
15 Hb_006736_040 0.1189279791 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
16 Hb_000060_080 0.1207838575 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
17 Hb_000991_080 0.1210556158 - - kinase, putative [Ricinus communis]
18 Hb_002325_050 0.1211166367 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
19 Hb_000714_070 0.1216166455 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
20 Hb_170632_010 0.1230356451 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002739_160 Hb_002739_160 Hb_030827_080 Hb_030827_080 Hb_002739_160--Hb_030827_080 Hb_153180_010 Hb_153180_010 Hb_002739_160--Hb_153180_010 Hb_010642_010 Hb_010642_010 Hb_002739_160--Hb_010642_010 Hb_008352_020 Hb_008352_020 Hb_002739_160--Hb_008352_020 Hb_001198_180 Hb_001198_180 Hb_002739_160--Hb_001198_180 Hb_001663_090 Hb_001663_090 Hb_002739_160--Hb_001663_090 Hb_030827_080--Hb_010642_010 Hb_030827_080--Hb_008352_020 Hb_030827_080--Hb_153180_010 Hb_030827_080--Hb_001198_180 Hb_030827_080--Hb_001663_090 Hb_001856_130 Hb_001856_130 Hb_153180_010--Hb_001856_130 Hb_153180_010--Hb_001198_180 Hb_002522_040 Hb_002522_040 Hb_153180_010--Hb_002522_040 Hb_008725_020 Hb_008725_020 Hb_153180_010--Hb_008725_020 Hb_010642_010--Hb_008352_020 Hb_038718_010 Hb_038718_010 Hb_010642_010--Hb_038718_010 Hb_003939_090 Hb_003939_090 Hb_010642_010--Hb_003939_090 Hb_010642_010--Hb_001198_180 Hb_145268_010 Hb_145268_010 Hb_008352_020--Hb_145268_010 Hb_000028_330 Hb_000028_330 Hb_008352_020--Hb_000028_330 Hb_008352_020--Hb_001663_090 Hb_001562_030 Hb_001562_030 Hb_001198_180--Hb_001562_030 Hb_002897_030 Hb_002897_030 Hb_001198_180--Hb_002897_030 Hb_011355_020 Hb_011355_020 Hb_001198_180--Hb_011355_020 Hb_001198_180--Hb_008725_020 Hb_029622_090 Hb_029622_090 Hb_001663_090--Hb_029622_090 Hb_002676_110 Hb_002676_110 Hb_001663_090--Hb_002676_110 Hb_001663_090--Hb_000028_330 Hb_000060_080 Hb_000060_080 Hb_001663_090--Hb_000060_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0115617 2.68347 1.88481 4.51402 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.593646 0.566081

CAGE analysis