Hb_002740_080

Information

Type -
Description -
Location Contig2740: 147150-157980
Sequence    

Annotation

kegg
ID rcu:RCOM_1436990
description flap endonuclease-1, putative
nr
ID XP_002512592.1
description flap endonuclease-1, putative [Ricinus communis]
swissprot
ID O65251
description Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2
trembl
ID B9RFS3
description Flap endonuclease 1 OS=Ricinus communis GN=FEN1 PE=3 SV=1
Gene Ontology
ID GO:0003677
description flap endonuclease 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28669: 147228-156720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_080 0.0 - - flap endonuclease-1, putative [Ricinus communis]
2 Hb_081599_010 0.0607590557 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001279_190 0.0723593073 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
4 Hb_000160_070 0.073396332 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
5 Hb_000072_300 0.0733973493 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
6 Hb_000815_300 0.0765712871 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_001227_120 0.0788883581 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
8 Hb_000665_170 0.0790552548 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
9 Hb_002552_040 0.0797770306 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
10 Hb_003540_050 0.0815653159 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
11 Hb_003777_030 0.0821429368 - - Exocyst complex component, putative [Ricinus communis]
12 Hb_001250_050 0.0844407088 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
13 Hb_003498_100 0.0867530749 - - component of oligomeric golgi complex, putative [Ricinus communis]
14 Hb_011716_010 0.0890267946 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
15 Hb_001677_200 0.0896224015 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007483_070 0.0910242672 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
17 Hb_000007_090 0.0913652844 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
18 Hb_001504_010 0.0921174554 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_000753_160 0.0922586183 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
20 Hb_004567_010 0.0922978429 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]

Gene co-expression network

sample Hb_002740_080 Hb_002740_080 Hb_081599_010 Hb_081599_010 Hb_002740_080--Hb_081599_010 Hb_001279_190 Hb_001279_190 Hb_002740_080--Hb_001279_190 Hb_000160_070 Hb_000160_070 Hb_002740_080--Hb_000160_070 Hb_000072_300 Hb_000072_300 Hb_002740_080--Hb_000072_300 Hb_000815_300 Hb_000815_300 Hb_002740_080--Hb_000815_300 Hb_001227_120 Hb_001227_120 Hb_002740_080--Hb_001227_120 Hb_081599_010--Hb_001227_120 Hb_000152_600 Hb_000152_600 Hb_081599_010--Hb_000152_600 Hb_003498_100 Hb_003498_100 Hb_081599_010--Hb_003498_100 Hb_081599_010--Hb_001279_190 Hb_001269_130 Hb_001269_130 Hb_081599_010--Hb_001269_130 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_002687_180 Hb_002687_180 Hb_001279_190--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_001279_190--Hb_001227_120 Hb_001677_200 Hb_001677_200 Hb_000160_070--Hb_001677_200 Hb_000160_070--Hb_001227_120 Hb_004064_040 Hb_004064_040 Hb_000160_070--Hb_004064_040 Hb_005064_010 Hb_005064_010 Hb_000160_070--Hb_005064_010 Hb_000903_010 Hb_000903_010 Hb_000160_070--Hb_000903_010 Hb_003540_050 Hb_003540_050 Hb_000072_300--Hb_003540_050 Hb_000359_290 Hb_000359_290 Hb_000072_300--Hb_000359_290 Hb_002686_080 Hb_002686_080 Hb_000072_300--Hb_002686_080 Hb_000072_300--Hb_005064_010 Hb_000072_300--Hb_000152_600 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_006970_020 Hb_006970_020 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040 Hb_159809_070 Hb_159809_070 Hb_001227_120--Hb_159809_070 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_000702_090 Hb_000702_090 Hb_001227_120--Hb_000702_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.40032 3.87607 9.82403 11.3097 3.24787 3.44154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45309 4.4969 2.7088 4.88937 6.45523

CAGE analysis