Hb_002740_090

Information

Type -
Description -
Location Contig2740: 162518-172163
Sequence    

Annotation

kegg
ID rcu:RCOM_1437100
description Glycerol uptake protein, putative
nr
ID XP_012088804.1
description PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
swissprot
ID Q09758
description Putative membrane-bound O-acyltransferase C24H6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.01c PE=3 SV=4
trembl
ID A0A067JHB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23154 PE=4 SV=1
Gene Ontology
ID GO:0016021
description membrane-bound o-acyltransferase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28670: 162610-171498 , PASA_asmbl_28671: 171880-172017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_090 0.0 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
2 Hb_007137_050 0.0779112845 - - Uncharacterized protein isoform 1 [Theobroma cacao]
3 Hb_086063_020 0.0783226511 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
4 Hb_188063_050 0.0798166044 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
5 Hb_000703_330 0.0849744486 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001250_050 0.0866190906 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
7 Hb_001227_120 0.0897030228 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
8 Hb_000215_300 0.0899110158 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
9 Hb_000622_110 0.0902164131 - - cmp-sialic acid transporter, putative [Ricinus communis]
10 Hb_001279_190 0.0909138699 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
11 Hb_012092_050 0.0914620582 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
12 Hb_006468_010 0.0929734557 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
13 Hb_001307_240 0.0930497946 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
14 Hb_030982_010 0.0948500464 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000656_300 0.0956866419 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
16 Hb_000258_110 0.0965603433 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
17 Hb_002639_030 0.0972164772 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
18 Hb_004837_280 0.0980570596 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
19 Hb_004064_040 0.0990080049 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
20 Hb_001892_030 0.0995172787 - - PREDICTED: phytanoyl-CoA dioxygenase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002740_090 Hb_002740_090 Hb_007137_050 Hb_007137_050 Hb_002740_090--Hb_007137_050 Hb_086063_020 Hb_086063_020 Hb_002740_090--Hb_086063_020 Hb_188063_050 Hb_188063_050 Hb_002740_090--Hb_188063_050 Hb_000703_330 Hb_000703_330 Hb_002740_090--Hb_000703_330 Hb_001250_050 Hb_001250_050 Hb_002740_090--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_002740_090--Hb_001227_120 Hb_007137_050--Hb_188063_050 Hb_000085_450 Hb_000085_450 Hb_007137_050--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_007137_050--Hb_001097_040 Hb_010042_030 Hb_010042_030 Hb_007137_050--Hb_010042_030 Hb_000579_130 Hb_000579_130 Hb_007137_050--Hb_000579_130 Hb_000215_300 Hb_000215_300 Hb_086063_020--Hb_000215_300 Hb_004037_020 Hb_004037_020 Hb_086063_020--Hb_004037_020 Hb_001405_210 Hb_001405_210 Hb_086063_020--Hb_001405_210 Hb_000258_110 Hb_000258_110 Hb_086063_020--Hb_000258_110 Hb_000702_090 Hb_000702_090 Hb_086063_020--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_086063_020--Hb_016172_030 Hb_000320_290 Hb_000320_290 Hb_188063_050--Hb_000320_290 Hb_188063_050--Hb_000258_110 Hb_188063_050--Hb_086063_020 Hb_000243_300 Hb_000243_300 Hb_188063_050--Hb_000243_300 Hb_007416_070 Hb_007416_070 Hb_000703_330--Hb_007416_070 Hb_008289_040 Hb_008289_040 Hb_000703_330--Hb_008289_040 Hb_000009_060 Hb_000009_060 Hb_000703_330--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_000703_330--Hb_000197_190 Hb_065968_010 Hb_065968_010 Hb_000703_330--Hb_065968_010 Hb_002639_030 Hb_002639_030 Hb_000703_330--Hb_002639_030 Hb_003777_030 Hb_003777_030 Hb_001250_050--Hb_003777_030 Hb_002687_180 Hb_002687_180 Hb_001250_050--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_001250_050--Hb_001279_190 Hb_000753_160 Hb_000753_160 Hb_001250_050--Hb_000753_160 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_001250_050--Hb_008289_040 Hb_159809_070 Hb_159809_070 Hb_001227_120--Hb_159809_070 Hb_001227_120--Hb_001279_190 Hb_000019_190 Hb_000019_190 Hb_001227_120--Hb_000019_190 Hb_023313_040 Hb_023313_040 Hb_001227_120--Hb_023313_040 Hb_001227_120--Hb_000702_090 Hb_081599_010 Hb_081599_010 Hb_001227_120--Hb_081599_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27752 3.14863 5.0968 6.69579 2.42905 2.28002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86057 2.13667 1.11568 5.10328 3.45447

CAGE analysis