Hb_002740_110

Information

Type -
Description -
Location Contig2740: 177812-189235
Sequence    

Annotation

kegg
ID rcu:RCOM_1437130
description phytochrome A, putative
nr
ID XP_012088799.1
description PREDICTED: phytochrome A [Jatropha curcas]
swissprot
ID O49934
description Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1
trembl
ID A0A067JKI6
description Phytochrome OS=Jatropha curcas GN=JCGZ_23151 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phytochrome a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28674: 178122-179130 , PASA_asmbl_28675: 178837-179130 , PASA_asmbl_28676: 183173-183538 , PASA_asmbl_28677: 183548-188361 , PASA_asmbl_28678: 189242-189383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_110 0.0 - - PREDICTED: phytochrome A [Jatropha curcas]
2 Hb_003253_040 0.0428467865 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
3 Hb_010174_110 0.0456847975 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
4 Hb_000028_280 0.0518476551 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
5 Hb_004994_220 0.0655932412 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
6 Hb_004032_380 0.065765824 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
7 Hb_004143_130 0.0675093223 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
8 Hb_003605_110 0.0695247513 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
9 Hb_006831_040 0.0697260931 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
10 Hb_000343_120 0.0700741803 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
11 Hb_002942_100 0.0717092404 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
12 Hb_000107_490 0.0764377768 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
13 Hb_001199_100 0.0769511838 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
14 Hb_004117_310 0.0786616383 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
15 Hb_001341_170 0.0803471248 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
16 Hb_001550_060 0.0805196235 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
17 Hb_000890_210 0.0813148361 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
18 Hb_012022_090 0.0818275847 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
19 Hb_009545_100 0.0822739632 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
20 Hb_000494_070 0.0825868143 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002740_110 Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_002740_110--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_002740_110--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_002740_110--Hb_000028_280 Hb_004994_220 Hb_004994_220 Hb_002740_110--Hb_004994_220 Hb_004032_380 Hb_004032_380 Hb_002740_110--Hb_004032_380 Hb_004143_130 Hb_004143_130 Hb_002740_110--Hb_004143_130 Hb_003253_040--Hb_010174_110 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_002942_100 Hb_002942_100 Hb_003253_040--Hb_002942_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_003253_040--Hb_004143_130 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_010174_110--Hb_004143_130 Hb_010174_110--Hb_004994_220 Hb_000343_120 Hb_000343_120 Hb_000028_280--Hb_000343_120 Hb_000028_280--Hb_004143_130 Hb_003605_110 Hb_003605_110 Hb_000028_280--Hb_003605_110 Hb_000028_280--Hb_003253_040 Hb_000028_280--Hb_004994_220 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270 Hb_004032_380--Hb_004143_130 Hb_004032_380--Hb_010174_110 Hb_005901_020 Hb_005901_020 Hb_004032_380--Hb_005901_020 Hb_004032_380--Hb_003253_040 Hb_004032_380--Hb_000028_280 Hb_004143_130--Hb_002942_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1101 19.9152 6.50529 12.5577 21.923 20.0691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7749 10.6321 23.1622 22.7512 16.8598

CAGE analysis