Hb_002740_130

Information

Type -
Description -
Location Contig2740: 199959-200507
Sequence    

Annotation

kegg
ID vvi:100855194
description general transcription factor IIF subunit 1
nr
ID XP_012088798.1
description PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_130 0.0 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
2 Hb_001673_120 0.1175278588 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
3 Hb_000120_050 0.1192618187 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
4 Hb_000369_060 0.1208044724 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
5 Hb_001140_200 0.121164823 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
6 Hb_000363_170 0.1225618572 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000258_430 0.125225128 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
8 Hb_001946_280 0.1278053286 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007943_080 0.1286365988 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
10 Hb_127979_010 0.1289825437 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
11 Hb_000134_350 0.1290859746 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
12 Hb_003428_110 0.1290917909 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
13 Hb_001295_020 0.129760221 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
14 Hb_000028_470 0.1300190101 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
15 Hb_010866_040 0.1316708708 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
16 Hb_001936_050 0.1319853481 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
17 Hb_001047_020 0.1323996034 - - -
18 Hb_003747_240 0.1335875277 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
19 Hb_000490_030 0.1339428356 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
20 Hb_003404_030 0.1350704685 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002740_130 Hb_002740_130 Hb_001673_120 Hb_001673_120 Hb_002740_130--Hb_001673_120 Hb_000120_050 Hb_000120_050 Hb_002740_130--Hb_000120_050 Hb_000369_060 Hb_000369_060 Hb_002740_130--Hb_000369_060 Hb_001140_200 Hb_001140_200 Hb_002740_130--Hb_001140_200 Hb_000363_170 Hb_000363_170 Hb_002740_130--Hb_000363_170 Hb_000258_430 Hb_000258_430 Hb_002740_130--Hb_000258_430 Hb_000028_470 Hb_000028_470 Hb_001673_120--Hb_000028_470 Hb_001673_120--Hb_001140_200 Hb_009404_010 Hb_009404_010 Hb_001673_120--Hb_009404_010 Hb_057183_040 Hb_057183_040 Hb_001673_120--Hb_057183_040 Hb_005754_020 Hb_005754_020 Hb_001673_120--Hb_005754_020 Hb_178968_150 Hb_178968_150 Hb_001673_120--Hb_178968_150 Hb_007943_080 Hb_007943_080 Hb_000120_050--Hb_007943_080 Hb_153258_010 Hb_153258_010 Hb_000120_050--Hb_153258_010 Hb_007558_140 Hb_007558_140 Hb_000120_050--Hb_007558_140 Hb_000358_080 Hb_000358_080 Hb_000120_050--Hb_000358_080 Hb_010863_080 Hb_010863_080 Hb_000120_050--Hb_010863_080 Hb_003297_030 Hb_003297_030 Hb_000120_050--Hb_003297_030 Hb_006091_030 Hb_006091_030 Hb_000369_060--Hb_006091_030 Hb_011639_050 Hb_011639_050 Hb_000369_060--Hb_011639_050 Hb_004440_100 Hb_004440_100 Hb_000369_060--Hb_004440_100 Hb_002400_270 Hb_002400_270 Hb_000369_060--Hb_002400_270 Hb_002874_070 Hb_002874_070 Hb_000369_060--Hb_002874_070 Hb_001846_060 Hb_001846_060 Hb_000369_060--Hb_001846_060 Hb_001140_200--Hb_057183_040 Hb_001823_100 Hb_001823_100 Hb_001140_200--Hb_001823_100 Hb_001936_050 Hb_001936_050 Hb_001140_200--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_001140_200--Hb_001981_070 Hb_001140_200--Hb_000028_470 Hb_010866_040 Hb_010866_040 Hb_000363_170--Hb_010866_040 Hb_001952_070 Hb_001952_070 Hb_000363_170--Hb_001952_070 Hb_005215_080 Hb_005215_080 Hb_000363_170--Hb_005215_080 Hb_002493_100 Hb_002493_100 Hb_000363_170--Hb_002493_100 Hb_001439_180 Hb_001439_180 Hb_000363_170--Hb_001439_180 Hb_002450_050 Hb_002450_050 Hb_000258_430--Hb_002450_050 Hb_006551_010 Hb_006551_010 Hb_000258_430--Hb_006551_010 Hb_001017_090 Hb_001017_090 Hb_000258_430--Hb_001017_090 Hb_000258_430--Hb_000028_470 Hb_010174_130 Hb_010174_130 Hb_000258_430--Hb_010174_130 Hb_003404_030 Hb_003404_030 Hb_000258_430--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8362 3.22225 1.57718 3.30606 14.7622 16.4186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2871 6.6301 20.202 6.21931 1.21151

CAGE analysis