Hb_002740_140

Information

Type -
Description -
Location Contig2740: 202433-202762
Sequence    

Annotation

kegg
ID rcu:RCOM_1437150
description hypothetical protein
nr
ID XP_010094929.1
description hypothetical protein L484_022679 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9RKV3
description Uncharacterized protein OS=Morus notabilis GN=L484_022679 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28681: 203545-203994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_140 0.0 - - hypothetical protein L484_022679 [Morus notabilis]
2 Hb_002311_030 0.0711628758 - - conserved hypothetical protein [Ricinus communis]
3 Hb_057862_010 0.0724363868 - - protein binding protein, putative [Ricinus communis]
4 Hb_162450_010 0.0746604684 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
5 Hb_049955_010 0.090534712 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
6 Hb_000815_050 0.0905678817 - - PREDICTED: expansin-A1 [Populus euphratica]
7 Hb_050898_040 0.0918186885 - - -
8 Hb_087992_010 0.0932438484 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
9 Hb_004218_270 0.0940143037 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
10 Hb_004079_070 0.0947671346 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
11 Hb_004162_200 0.0948107266 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
12 Hb_000933_030 0.0966784062 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
13 Hb_007113_060 0.0983316802 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
14 Hb_093084_030 0.1008050468 - - oleosin2 [Plukenetia volubilis]
15 Hb_166360_010 0.1016853083 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
16 Hb_185608_010 0.1025444378 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
17 Hb_011549_040 0.1042146564 - - -
18 Hb_006846_040 0.104400346 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
19 Hb_000816_140 0.1051186737 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
20 Hb_000057_090 0.1056954031 - - hypothetical protein RCOM_1494490 [Ricinus communis]

Gene co-expression network

sample Hb_002740_140 Hb_002740_140 Hb_002311_030 Hb_002311_030 Hb_002740_140--Hb_002311_030 Hb_057862_010 Hb_057862_010 Hb_002740_140--Hb_057862_010 Hb_162450_010 Hb_162450_010 Hb_002740_140--Hb_162450_010 Hb_049955_010 Hb_049955_010 Hb_002740_140--Hb_049955_010 Hb_000815_050 Hb_000815_050 Hb_002740_140--Hb_000815_050 Hb_050898_040 Hb_050898_040 Hb_002740_140--Hb_050898_040 Hb_004162_200 Hb_004162_200 Hb_002311_030--Hb_004162_200 Hb_007113_060 Hb_007113_060 Hb_002311_030--Hb_007113_060 Hb_009151_010 Hb_009151_010 Hb_002311_030--Hb_009151_010 Hb_002311_030--Hb_057862_010 Hb_002311_030--Hb_162450_010 Hb_185608_010 Hb_185608_010 Hb_057862_010--Hb_185608_010 Hb_057862_010--Hb_162450_010 Hb_057862_010--Hb_049955_010 Hb_011344_040 Hb_011344_040 Hb_057862_010--Hb_011344_040 Hb_093084_030 Hb_093084_030 Hb_057862_010--Hb_093084_030 Hb_166360_010 Hb_166360_010 Hb_162450_010--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_162450_010--Hb_004218_270 Hb_162450_010--Hb_093084_030 Hb_162450_010--Hb_185608_010 Hb_005532_080 Hb_005532_080 Hb_162450_010--Hb_005532_080 Hb_049955_010--Hb_185608_010 Hb_049955_010--Hb_162450_010 Hb_005269_060 Hb_005269_060 Hb_049955_010--Hb_005269_060 Hb_000343_070 Hb_000343_070 Hb_049955_010--Hb_000343_070 Hb_049955_010--Hb_005532_080 Hb_000742_070 Hb_000742_070 Hb_000815_050--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_000815_050--Hb_023582_030 Hb_000816_140 Hb_000816_140 Hb_000815_050--Hb_000816_140 Hb_000933_030 Hb_000933_030 Hb_000815_050--Hb_000933_030 Hb_004079_070 Hb_004079_070 Hb_000815_050--Hb_004079_070 Hb_000134_190 Hb_000134_190 Hb_000815_050--Hb_000134_190 Hb_029883_010 Hb_029883_010 Hb_050898_040--Hb_029883_010 Hb_050898_040--Hb_004162_200 Hb_004686_040 Hb_004686_040 Hb_050898_040--Hb_004686_040 Hb_000020_170 Hb_000020_170 Hb_050898_040--Hb_000020_170 Hb_002783_100 Hb_002783_100 Hb_050898_040--Hb_002783_100 Hb_005295_030 Hb_005295_030 Hb_050898_040--Hb_005295_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.31914 14.7775 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.424326 5.70743

CAGE analysis