Hb_002740_170

Information

Type -
Description -
Location Contig2740: 210256-210615
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00260g
description hypothetical protein
nr
ID XP_012088797.1
description PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9N3Z7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s00260g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 006_J21.ab1: 210070-210738

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_170 0.0 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
2 Hb_003878_100 0.1408685157 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
3 Hb_040963_010 0.1412683887 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
4 Hb_005618_110 0.1416340233 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000254_150 0.1418199637 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
6 Hb_148121_030 0.1573613915 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
7 Hb_001675_130 0.1599069138 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
8 Hb_007919_030 0.170749575 - - -
9 Hb_001388_020 0.1712517626 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
10 Hb_000685_040 0.1772693674 - - hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]
11 Hb_002928_220 0.1784599617 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
12 Hb_006938_010 0.1785635571 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_002542_090 0.1801506759 - - Potassium transporter, putative [Ricinus communis]
14 Hb_001623_470 0.1804972449 - - ammonium transporter, putative [Ricinus communis]
15 Hb_000177_120 0.1814892222 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
16 Hb_006569_110 0.1819760685 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000291_320 0.1860871005 - - Protein MLO, putative [Ricinus communis]
18 Hb_001252_040 0.1879538855 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
19 Hb_001769_030 0.1881351159 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
20 Hb_000521_360 0.1882444807 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]

Gene co-expression network

sample Hb_002740_170 Hb_002740_170 Hb_003878_100 Hb_003878_100 Hb_002740_170--Hb_003878_100 Hb_040963_010 Hb_040963_010 Hb_002740_170--Hb_040963_010 Hb_005618_110 Hb_005618_110 Hb_002740_170--Hb_005618_110 Hb_000254_150 Hb_000254_150 Hb_002740_170--Hb_000254_150 Hb_148121_030 Hb_148121_030 Hb_002740_170--Hb_148121_030 Hb_001675_130 Hb_001675_130 Hb_002740_170--Hb_001675_130 Hb_001623_470 Hb_001623_470 Hb_003878_100--Hb_001623_470 Hb_000203_060 Hb_000203_060 Hb_003878_100--Hb_000203_060 Hb_001709_070 Hb_001709_070 Hb_003878_100--Hb_001709_070 Hb_001769_030 Hb_001769_030 Hb_003878_100--Hb_001769_030 Hb_000512_040 Hb_000512_040 Hb_003878_100--Hb_000512_040 Hb_040963_010--Hb_148121_030 Hb_000149_120 Hb_000149_120 Hb_040963_010--Hb_000149_120 Hb_040963_010--Hb_005618_110 Hb_001388_020 Hb_001388_020 Hb_040963_010--Hb_001388_020 Hb_002928_220 Hb_002928_220 Hb_040963_010--Hb_002928_220 Hb_005618_110--Hb_000254_150 Hb_005618_110--Hb_148121_030 Hb_005618_110--Hb_000149_120 Hb_032299_070 Hb_032299_070 Hb_005618_110--Hb_032299_070 Hb_006569_110 Hb_006569_110 Hb_000254_150--Hb_006569_110 Hb_018212_020 Hb_018212_020 Hb_000254_150--Hb_018212_020 Hb_010813_030 Hb_010813_030 Hb_000254_150--Hb_010813_030 Hb_000254_150--Hb_001675_130 Hb_006938_010 Hb_006938_010 Hb_000254_150--Hb_006938_010 Hb_120268_010 Hb_120268_010 Hb_148121_030--Hb_120268_010 Hb_148121_030--Hb_001388_020 Hb_148121_030--Hb_000203_060 Hb_007919_030 Hb_007919_030 Hb_001675_130--Hb_007919_030 Hb_000684_010 Hb_000684_010 Hb_001675_130--Hb_000684_010 Hb_003767_010 Hb_003767_010 Hb_001675_130--Hb_003767_010 Hb_000649_280 Hb_000649_280 Hb_001675_130--Hb_000649_280 Hb_001675_130--Hb_010813_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.9283 4.88123 0.721486 0 0.761447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.386914 0.298587 20.7471 8.17093

CAGE analysis