Hb_002742_070

Information

Type -
Description -
Location Contig2742: 163716-171445
Sequence    

Annotation

kegg
ID pxb:103949359
description villin-4
nr
ID XP_012075141.1
description PREDICTED: villin-4-like [Jatropha curcas]
swissprot
ID O65570
description Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1
trembl
ID A0A067KGP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10390 PE=4 SV=1
Gene Ontology
ID GO:0051015
description villin-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28719: 161462-198538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002742_070 0.0 - - PREDICTED: villin-4-like [Jatropha curcas]
2 Hb_002815_060 0.0837561327 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
3 Hb_178041_010 0.1199584266 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
4 Hb_003157_030 0.1212578997 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
5 Hb_010128_120 0.1270905081 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
6 Hb_000330_160 0.127456336 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
7 Hb_011953_030 0.1322399977 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
8 Hb_051437_010 0.134641721 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
9 Hb_005144_030 0.1361071441 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
10 Hb_031069_020 0.1392723626 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
11 Hb_001040_120 0.1430499732 - - allantoinase, putative [Ricinus communis]
12 Hb_012180_040 0.1479923324 - - hypothetical protein VITISV_042517 [Vitis vinifera]
13 Hb_003029_130 0.1483862371 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
14 Hb_036702_010 0.1483918957 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_000486_060 0.1489907632 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
16 Hb_009119_030 0.1494220793 - - GMFP4 [Medicago truncatula]
17 Hb_058702_010 0.149575158 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
18 Hb_000487_220 0.1501186693 - - eukaryotic translation elongation factor, putative [Ricinus communis]
19 Hb_003376_070 0.1504485191 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
20 Hb_102269_010 0.151266429 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]

Gene co-expression network

sample Hb_002742_070 Hb_002742_070 Hb_002815_060 Hb_002815_060 Hb_002742_070--Hb_002815_060 Hb_178041_010 Hb_178041_010 Hb_002742_070--Hb_178041_010 Hb_003157_030 Hb_003157_030 Hb_002742_070--Hb_003157_030 Hb_010128_120 Hb_010128_120 Hb_002742_070--Hb_010128_120 Hb_000330_160 Hb_000330_160 Hb_002742_070--Hb_000330_160 Hb_011953_030 Hb_011953_030 Hb_002742_070--Hb_011953_030 Hb_011206_010 Hb_011206_010 Hb_002815_060--Hb_011206_010 Hb_001731_020 Hb_001731_020 Hb_002815_060--Hb_001731_020 Hb_031069_020 Hb_031069_020 Hb_002815_060--Hb_031069_020 Hb_002903_080 Hb_002903_080 Hb_002815_060--Hb_002903_080 Hb_001040_120 Hb_001040_120 Hb_002815_060--Hb_001040_120 Hb_051437_010 Hb_051437_010 Hb_178041_010--Hb_051437_010 Hb_130134_030 Hb_130134_030 Hb_178041_010--Hb_130134_030 Hb_178041_010--Hb_002815_060 Hb_088428_010 Hb_088428_010 Hb_178041_010--Hb_088428_010 Hb_171788_010 Hb_171788_010 Hb_178041_010--Hb_171788_010 Hb_006501_020 Hb_006501_020 Hb_003157_030--Hb_006501_020 Hb_003157_030--Hb_002815_060 Hb_003157_030--Hb_031069_020 Hb_003376_070 Hb_003376_070 Hb_003157_030--Hb_003376_070 Hb_141547_010 Hb_141547_010 Hb_003157_030--Hb_141547_010 Hb_000108_080 Hb_000108_080 Hb_010128_120--Hb_000108_080 Hb_001811_120 Hb_001811_120 Hb_010128_120--Hb_001811_120 Hb_004037_030 Hb_004037_030 Hb_010128_120--Hb_004037_030 Hb_000475_020 Hb_000475_020 Hb_010128_120--Hb_000475_020 Hb_007904_180 Hb_007904_180 Hb_010128_120--Hb_007904_180 Hb_010128_120--Hb_031069_020 Hb_005144_030 Hb_005144_030 Hb_000330_160--Hb_005144_030 Hb_000330_160--Hb_011953_030 Hb_003814_030 Hb_003814_030 Hb_000330_160--Hb_003814_030 Hb_001031_040 Hb_001031_040 Hb_000330_160--Hb_001031_040 Hb_000136_190 Hb_000136_190 Hb_000330_160--Hb_000136_190 Hb_000997_410 Hb_000997_410 Hb_011953_030--Hb_000997_410 Hb_011953_030--Hb_001040_120 Hb_011953_030--Hb_002815_060 Hb_003436_050 Hb_003436_050 Hb_011953_030--Hb_003436_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2927 7.58612 2.77733 8.61007 11.7023 28.0206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.17507 1.07681 2.40177 5.8488 5.51455

CAGE analysis