Hb_002742_080

Information

Type -
Description -
Location Contig2742: 184300-198589
Sequence    

Annotation

kegg
ID pmum:103343962
description villin-4-like
nr
ID ABK93411.1
description unknown [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PAK8
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0051015
description villin-4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28719: 161462-198538 , PASA_asmbl_28720: 187839-198286 , PASA_asmbl_28721: 189676-189995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002742_080 0.0 - - unknown [Populus trichocarpa]
2 Hb_001052_040 0.1122952424 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
3 Hb_005333_030 0.117654228 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
4 Hb_003710_040 0.1237693171 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_000261_290 0.1269710531 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
6 Hb_128376_010 0.1274365515 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002320_070 0.129990412 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002066_080 0.131682057 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
9 Hb_003097_180 0.1326223587 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
10 Hb_000336_270 0.132864716 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_000120_620 0.1344374608 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
12 Hb_002000_060 0.1345267824 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
13 Hb_001369_350 0.1345518363 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
14 Hb_012404_070 0.1357905189 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
15 Hb_001178_150 0.1364575779 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
16 Hb_000363_380 0.1374384012 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
17 Hb_073973_160 0.1376974653 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
18 Hb_015354_010 0.1377439235 - - PREDICTED: B2 protein [Jatropha curcas]
19 Hb_000158_130 0.1381181307 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
20 Hb_000365_160 0.1382871473 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]

Gene co-expression network

sample Hb_002742_080 Hb_002742_080 Hb_001052_040 Hb_001052_040 Hb_002742_080--Hb_001052_040 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_000261_290 Hb_000261_290 Hb_002742_080--Hb_000261_290 Hb_128376_010 Hb_128376_010 Hb_002742_080--Hb_128376_010 Hb_002320_070 Hb_002320_070 Hb_002742_080--Hb_002320_070 Hb_015354_010 Hb_015354_010 Hb_001052_040--Hb_015354_010 Hb_000886_060 Hb_000886_060 Hb_001052_040--Hb_000886_060 Hb_000152_670 Hb_000152_670 Hb_001052_040--Hb_000152_670 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_173178_020 Hb_173178_020 Hb_001052_040--Hb_173178_020 Hb_002666_080 Hb_002666_080 Hb_005333_030--Hb_002666_080 Hb_005333_030--Hb_003710_040 Hb_167381_020 Hb_167381_020 Hb_005333_030--Hb_167381_020 Hb_004017_040 Hb_004017_040 Hb_005333_030--Hb_004017_040 Hb_118840_050 Hb_118840_050 Hb_005333_030--Hb_118840_050 Hb_005333_030--Hb_000261_290 Hb_001221_160 Hb_001221_160 Hb_003710_040--Hb_001221_160 Hb_004899_070 Hb_004899_070 Hb_003710_040--Hb_004899_070 Hb_009028_030 Hb_009028_030 Hb_003710_040--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003710_040--Hb_000640_200 Hb_057451_010 Hb_057451_010 Hb_003710_040--Hb_057451_010 Hb_003710_040--Hb_000261_290 Hb_000098_130 Hb_000098_130 Hb_000261_290--Hb_000098_130 Hb_000261_290--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050 Hb_128376_010--Hb_000152_670 Hb_128376_010--Hb_004017_040 Hb_128376_010--Hb_001052_040 Hb_128376_010--Hb_000261_290 Hb_010883_080 Hb_010883_080 Hb_128376_010--Hb_010883_080 Hb_005408_020 Hb_005408_020 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_009119_030 Hb_009119_030 Hb_002320_070--Hb_009119_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.5813 34.4728 16.2743 21.082 27.3557 45.5361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99678 5.22165 3.6746 8.42664 9.22118

CAGE analysis