Hb_002748_020

Information

Type -
Description -
Location Contig2748: 32772-35378
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23870g
description POPTRDRAFT_567716; transducin family protein
nr
ID XP_002316416.2
description transducin family protein [Populus trichocarpa]
swissprot
ID Q8GYE0
description SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=1 SV=2
trembl
ID B9HUX2
description Transducin family protein OS=Populus trichocarpa GN=POPTR_0010s23870g PE=4 SV=2
Gene Ontology
ID GO:0005737
description sec12-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28786: 32461-46891
cDNA
(Sanger)
(ID:Location)		 028_C02.ab1: 34814-46889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002748_020 0.0 - - transducin family protein [Populus trichocarpa]
2 Hb_001629_030 0.0833572894 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
3 Hb_000019_200 0.0921853293 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
4 Hb_005601_040 0.0922984559 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
5 Hb_000095_080 0.0945371738 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
6 Hb_000656_010 0.0960923381 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
7 Hb_006275_070 0.1002980444 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
8 Hb_001936_130 0.1009318709 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
9 Hb_001818_100 0.1040051184 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
10 Hb_004159_020 0.104023315 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
11 Hb_008176_010 0.1052707678 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
12 Hb_003206_110 0.1063635499 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
13 Hb_000069_210 0.1069569589 - - PREDICTED: exportin-2 [Jatropha curcas]
14 Hb_012393_030 0.1074376233 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
15 Hb_003994_150 0.1081742441 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
16 Hb_006277_010 0.1084533084 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
17 Hb_001195_400 0.1085337466 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
18 Hb_013726_090 0.1096991151 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
19 Hb_001105_020 0.1110499501 - - expressed protein, putative [Ricinus communis]
20 Hb_091296_010 0.1114737345 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_002748_020 Hb_002748_020 Hb_001629_030 Hb_001629_030 Hb_002748_020--Hb_001629_030 Hb_000019_200 Hb_000019_200 Hb_002748_020--Hb_000019_200 Hb_005601_040 Hb_005601_040 Hb_002748_020--Hb_005601_040 Hb_000095_080 Hb_000095_080 Hb_002748_020--Hb_000095_080 Hb_000656_010 Hb_000656_010 Hb_002748_020--Hb_000656_010 Hb_006275_070 Hb_006275_070 Hb_002748_020--Hb_006275_070 Hb_001818_100 Hb_001818_100 Hb_001629_030--Hb_001818_100 Hb_001629_030--Hb_005601_040 Hb_004108_160 Hb_004108_160 Hb_001629_030--Hb_004108_160 Hb_001629_030--Hb_000656_010 Hb_004052_170 Hb_004052_170 Hb_001629_030--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_001629_030--Hb_003153_010 Hb_000019_200--Hb_001629_030 Hb_165928_040 Hb_165928_040 Hb_000019_200--Hb_165928_040 Hb_000046_540 Hb_000046_540 Hb_000019_200--Hb_000046_540 Hb_000189_550 Hb_000189_550 Hb_000019_200--Hb_000189_550 Hb_006277_010 Hb_006277_010 Hb_000019_200--Hb_006277_010 Hb_001195_400 Hb_001195_400 Hb_005601_040--Hb_001195_400 Hb_005601_040--Hb_001818_100 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_000185_220 Hb_000185_220 Hb_005601_040--Hb_000185_220 Hb_003305_040 Hb_003305_040 Hb_005601_040--Hb_003305_040 Hb_000072_320 Hb_000072_320 Hb_000095_080--Hb_000072_320 Hb_001999_310 Hb_001999_310 Hb_000095_080--Hb_001999_310 Hb_000069_210 Hb_000069_210 Hb_000095_080--Hb_000069_210 Hb_001016_120 Hb_001016_120 Hb_000095_080--Hb_001016_120 Hb_007416_090 Hb_007416_090 Hb_000095_080--Hb_007416_090 Hb_000095_080--Hb_000656_010 Hb_001876_010 Hb_001876_010 Hb_000656_010--Hb_001876_010 Hb_000789_200 Hb_000789_200 Hb_000656_010--Hb_000789_200 Hb_000656_010--Hb_005976_080 Hb_000656_010--Hb_000189_550 Hb_013726_090 Hb_013726_090 Hb_000656_010--Hb_013726_090 Hb_029879_070 Hb_029879_070 Hb_006275_070--Hb_029879_070 Hb_000479_250 Hb_000479_250 Hb_006275_070--Hb_000479_250 Hb_006275_070--Hb_000656_010 Hb_001936_130 Hb_001936_130 Hb_006275_070--Hb_001936_130 Hb_008176_010 Hb_008176_010 Hb_006275_070--Hb_008176_010 Hb_004159_020 Hb_004159_020 Hb_006275_070--Hb_004159_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.64642 5.19181 10.1382 14.6282 5.14711 12.3946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.78516 7.78851 18.2252 17.9348 17.596

CAGE analysis