Hb_002748_030

Information

Type -
Description -
Location Contig2748: 45358-46830
Sequence    

Annotation

kegg
ID rcu:RCOM_0114680
description nucleotide binding protein, putative (EC:1.3.1.74)
nr
ID XP_002532922.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3V3
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_0114680 PE=4 SV=1
Gene Ontology
ID GO:0005737
description sec12-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28786: 32461-46891
cDNA
(Sanger)
(ID:Location)		 028_C02.ab1: 34814-46889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002748_030 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_142343_010 0.1290974904 - - ATP binding protein, putative [Ricinus communis]
3 Hb_002311_340 0.1358183985 - - phospholipase d zeta, putative [Ricinus communis]
4 Hb_001157_110 0.1422957356 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
5 Hb_000020_120 0.1435386054 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
6 Hb_163975_010 0.1461819161 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
7 Hb_000327_160 0.1542743297 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_002748_020 0.1545741736 - - transducin family protein [Populus trichocarpa]
9 Hb_001971_060 0.1561655842 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
10 Hb_098315_080 0.1581850649 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
11 Hb_001008_180 0.161143301 - - -
12 Hb_007054_010 0.1618876717 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
13 Hb_001246_030 0.1626714901 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
14 Hb_019654_030 0.1630389159 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
15 Hb_003370_050 0.163780839 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]
16 Hb_038564_010 0.1653556436 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
17 Hb_006162_010 0.1655265847 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
18 Hb_006698_080 0.166384045 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
19 Hb_007044_050 0.1697944367 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
20 Hb_000094_210 0.1732515616 - - glucose-6-phosphate isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002748_030 Hb_002748_030 Hb_142343_010 Hb_142343_010 Hb_002748_030--Hb_142343_010 Hb_002311_340 Hb_002311_340 Hb_002748_030--Hb_002311_340 Hb_001157_110 Hb_001157_110 Hb_002748_030--Hb_001157_110 Hb_000020_120 Hb_000020_120 Hb_002748_030--Hb_000020_120 Hb_163975_010 Hb_163975_010 Hb_002748_030--Hb_163975_010 Hb_000327_160 Hb_000327_160 Hb_002748_030--Hb_000327_160 Hb_152371_010 Hb_152371_010 Hb_142343_010--Hb_152371_010 Hb_142343_010--Hb_002311_340 Hb_142343_010--Hb_163975_010 Hb_138475_010 Hb_138475_010 Hb_142343_010--Hb_138475_010 Hb_000228_110 Hb_000228_110 Hb_142343_010--Hb_000228_110 Hb_003847_030 Hb_003847_030 Hb_002311_340--Hb_003847_030 Hb_000504_070 Hb_000504_070 Hb_002311_340--Hb_000504_070 Hb_028227_070 Hb_028227_070 Hb_002311_340--Hb_028227_070 Hb_109002_020 Hb_109002_020 Hb_002311_340--Hb_109002_020 Hb_001414_030 Hb_001414_030 Hb_002311_340--Hb_001414_030 Hb_000497_110 Hb_000497_110 Hb_001157_110--Hb_000497_110 Hb_000096_160 Hb_000096_160 Hb_001157_110--Hb_000096_160 Hb_019654_030 Hb_019654_030 Hb_001157_110--Hb_019654_030 Hb_002631_080 Hb_002631_080 Hb_001157_110--Hb_002631_080 Hb_001157_110--Hb_000228_110 Hb_001085_240 Hb_001085_240 Hb_001157_110--Hb_001085_240 Hb_000479_140 Hb_000479_140 Hb_000020_120--Hb_000479_140 Hb_042202_030 Hb_042202_030 Hb_000020_120--Hb_042202_030 Hb_000406_130 Hb_000406_130 Hb_000020_120--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_000020_120--Hb_007416_060 Hb_008725_170 Hb_008725_170 Hb_000020_120--Hb_008725_170 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250 Hb_082793_010 Hb_082793_010 Hb_163975_010--Hb_082793_010 Hb_002748_020 Hb_002748_020 Hb_163975_010--Hb_002748_020 Hb_084670_010 Hb_084670_010 Hb_163975_010--Hb_084670_010 Hb_002908_060 Hb_002908_060 Hb_163975_010--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_163975_010--Hb_000053_060 Hb_000327_160--Hb_002748_020 Hb_000950_010 Hb_000950_010 Hb_000327_160--Hb_000950_010 Hb_000203_260 Hb_000203_260 Hb_000327_160--Hb_000203_260 Hb_000094_210 Hb_000094_210 Hb_000327_160--Hb_000094_210 Hb_000366_200 Hb_000366_200 Hb_000327_160--Hb_000366_200 Hb_003994_150 Hb_003994_150 Hb_000327_160--Hb_003994_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96272 3.0682 3.65018 10.3624 2.2431 11.8068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.15937 7.62539 21.4018 21.8368 11.4947

CAGE analysis