Hb_002749_040

Information

Type -
Description -
Location Contig2749: 25480-25788
Sequence    

Annotation

kegg
ID tcc:TCM_020231
description Ribosomal protein L6 family protein
nr
ID XP_007034223.1
description Ribosomal protein L6 family protein [Theobroma cacao]
swissprot
ID P26861
description 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2
trembl
ID A0A061ES89
description Ribosomal protein L6 family protein OS=Theobroma cacao GN=TCM_020231 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28789: 25347-26704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002749_040 0.0 - - Ribosomal protein L6 family protein [Theobroma cacao]
2 Hb_155444_010 0.1144132685 - - -
3 Hb_012395_050 0.119766103 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
4 Hb_000032_430 0.136932566 - - conserved hypothetical protein [Ricinus communis]
5 Hb_030685_010 0.1369552698 - - -
6 Hb_002272_200 0.1389270917 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
7 Hb_002518_020 0.1423207915 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
8 Hb_001178_090 0.1425376137 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
9 Hb_179960_010 0.1482503188 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
10 Hb_002203_020 0.1561182169 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004558_060 0.1571885791 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
12 Hb_005000_280 0.1608237943 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
13 Hb_139461_010 0.1619237453 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
14 Hb_061054_010 0.1626394123 - - hypothetical protein JCGZ_01675 [Jatropha curcas]
15 Hb_005056_120 0.16350049 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001769_070 0.1647734724 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
17 Hb_000011_260 0.1650066719 - - conserved hypothetical protein [Ricinus communis]
18 Hb_134014_010 0.166079053 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
19 Hb_000679_250 0.1663572467 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
20 Hb_029142_040 0.1666866446 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002749_040 Hb_002749_040 Hb_155444_010 Hb_155444_010 Hb_002749_040--Hb_155444_010 Hb_012395_050 Hb_012395_050 Hb_002749_040--Hb_012395_050 Hb_000032_430 Hb_000032_430 Hb_002749_040--Hb_000032_430 Hb_030685_010 Hb_030685_010 Hb_002749_040--Hb_030685_010 Hb_002272_200 Hb_002272_200 Hb_002749_040--Hb_002272_200 Hb_002518_020 Hb_002518_020 Hb_002749_040--Hb_002518_020 Hb_155444_010--Hb_012395_050 Hb_029142_040 Hb_029142_040 Hb_155444_010--Hb_029142_040 Hb_155444_010--Hb_002518_020 Hb_000645_160 Hb_000645_160 Hb_155444_010--Hb_000645_160 Hb_000997_240 Hb_000997_240 Hb_155444_010--Hb_000997_240 Hb_179960_010 Hb_179960_010 Hb_012395_050--Hb_179960_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_012395_050--Hb_029142_040 Hb_012395_050--Hb_000997_240 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130 Hb_001178_090 Hb_001178_090 Hb_000032_430--Hb_001178_090 Hb_160405_010 Hb_160405_010 Hb_000032_430--Hb_160405_010 Hb_003647_040 Hb_003647_040 Hb_000032_430--Hb_003647_040 Hb_002539_050 Hb_002539_050 Hb_000032_430--Hb_002539_050 Hb_003050_100 Hb_003050_100 Hb_000032_430--Hb_003050_100 Hb_003540_120 Hb_003540_120 Hb_030685_010--Hb_003540_120 Hb_000093_090 Hb_000093_090 Hb_030685_010--Hb_000093_090 Hb_003728_110 Hb_003728_110 Hb_030685_010--Hb_003728_110 Hb_001188_050 Hb_001188_050 Hb_030685_010--Hb_001188_050 Hb_003055_080 Hb_003055_080 Hb_030685_010--Hb_003055_080 Hb_002490_030 Hb_002490_030 Hb_002272_200--Hb_002490_030 Hb_007749_020 Hb_007749_020 Hb_002272_200--Hb_007749_020 Hb_000260_110 Hb_000260_110 Hb_002272_200--Hb_000260_110 Hb_066514_010 Hb_066514_010 Hb_002272_200--Hb_066514_010 Hb_000302_100 Hb_000302_100 Hb_002272_200--Hb_000302_100 Hb_005000_280 Hb_005000_280 Hb_002518_020--Hb_005000_280 Hb_001769_070 Hb_001769_070 Hb_002518_020--Hb_001769_070 Hb_004558_060 Hb_004558_060 Hb_002518_020--Hb_004558_060 Hb_000076_280 Hb_000076_280 Hb_002518_020--Hb_000076_280 Hb_002171_020 Hb_002171_020 Hb_002518_020--Hb_002171_020 Hb_000329_010 Hb_000329_010 Hb_002518_020--Hb_000329_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18171 6.23921 10.4647 34.7463 0.554508 2.43096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.273801 0.395294 6.57471 5.1588

CAGE analysis