Hb_002749_090

Information

Type -
Description -
Location Contig2749: 62911-63895
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28798: 62851-63968
cDNA
(Sanger)
(ID:Location)		 009_K23.ab1: 63100-63968

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002749_090 0.0 - - -
2 Hb_009646_030 0.0895979832 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000236_240 0.0957369045 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
4 Hb_005288_150 0.0966929861 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
5 Hb_003020_010 0.1006110564 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
6 Hb_002997_080 0.1017327929 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
7 Hb_000883_130 0.1022411082 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
8 Hb_004837_190 0.1025993576 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
9 Hb_031527_100 0.1026683836 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000390_170 0.1058365359 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
11 Hb_001329_130 0.106411506 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000260_100 0.1078811119 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003018_060 0.1090363628 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
14 Hb_004007_220 0.1102879288 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
15 Hb_001357_090 0.1105252913 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
16 Hb_002918_030 0.1119220369 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
17 Hb_011618_050 0.1129318504 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
18 Hb_008096_010 0.1130681522 - - hypothetical protein MTR_1g045660 [Medicago truncatula]
19 Hb_005656_210 0.1132430905 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
20 Hb_000010_090 0.1139715923 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002749_090 Hb_002749_090 Hb_009646_030 Hb_009646_030 Hb_002749_090--Hb_009646_030 Hb_000236_240 Hb_000236_240 Hb_002749_090--Hb_000236_240 Hb_005288_150 Hb_005288_150 Hb_002749_090--Hb_005288_150 Hb_003020_010 Hb_003020_010 Hb_002749_090--Hb_003020_010 Hb_002997_080 Hb_002997_080 Hb_002749_090--Hb_002997_080 Hb_000883_130 Hb_000883_130 Hb_002749_090--Hb_000883_130 Hb_006620_020 Hb_006620_020 Hb_009646_030--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_009646_030--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_009646_030--Hb_001926_030 Hb_000879_200 Hb_000879_200 Hb_009646_030--Hb_000879_200 Hb_009646_030--Hb_002997_080 Hb_002078_020 Hb_002078_020 Hb_009646_030--Hb_002078_020 Hb_000260_100 Hb_000260_100 Hb_000236_240--Hb_000260_100 Hb_001329_130 Hb_001329_130 Hb_000236_240--Hb_001329_130 Hb_000236_240--Hb_002997_080 Hb_000883_020 Hb_000883_020 Hb_000236_240--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_000236_240--Hb_000866_010 Hb_009421_020 Hb_009421_020 Hb_000236_240--Hb_009421_020 Hb_005288_150--Hb_000260_100 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_020367_050 Hb_020367_050 Hb_005288_150--Hb_020367_050 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_005288_150--Hb_001329_130 Hb_016461_010 Hb_016461_010 Hb_003020_010--Hb_016461_010 Hb_000390_170 Hb_000390_170 Hb_003020_010--Hb_000390_170 Hb_003020_010--Hb_020367_050 Hb_003020_010--Hb_005288_150 Hb_000390_180 Hb_000390_180 Hb_003020_010--Hb_000390_180 Hb_003020_010--Hb_001329_130 Hb_000230_560 Hb_000230_560 Hb_002997_080--Hb_000230_560 Hb_002997_080--Hb_000260_100 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000299_040 Hb_000299_040 Hb_000883_130--Hb_000299_040 Hb_000010_090 Hb_000010_090 Hb_000883_130--Hb_000010_090 Hb_001348_050 Hb_001348_050 Hb_000883_130--Hb_001348_050 Hb_004837_190 Hb_004837_190 Hb_000883_130--Hb_004837_190 Hb_014720_160 Hb_014720_160 Hb_000883_130--Hb_014720_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4923 3.13832 13.9927 7.76214 19.5714 10.4232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.57533 9.82651 11.8452 6.39938 6.56022

CAGE analysis