Hb_002749_100

Information

Type -
Description -
Location Contig2749: 65182-71402
Sequence    

Annotation

kegg
ID gmx:100306399
description uncharacterized LOC100306399
nr
ID XP_012074542.1
description PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q6DG43
description Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1
trembl
ID A0A067LC19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13482 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28799: 65112-71384 , PASA_asmbl_28800: 66481-66581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002749_100 0.0 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
2 Hb_084849_020 0.0829311722 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_000362_210 0.0861701302 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
4 Hb_007047_010 0.0890924907 - - PREDICTED: expansin-A13 [Jatropha curcas]
5 Hb_011161_040 0.089719147 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
6 Hb_002660_160 0.0917416523 - - protein binding protein, putative [Ricinus communis]
7 Hb_001133_020 0.0943504702 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
8 Hb_024650_020 0.095824181 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
9 Hb_004899_320 0.1000887365 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
10 Hb_001427_120 0.1011529759 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
11 Hb_000048_050 0.1039151789 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
12 Hb_001369_050 0.1055942577 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
13 Hb_002447_030 0.106911766 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
14 Hb_008311_010 0.1075461776 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
15 Hb_002352_010 0.1078872445 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
16 Hb_011794_070 0.1092547849 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
17 Hb_001609_030 0.1096335481 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
18 Hb_002026_190 0.1107381207 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
19 Hb_003927_130 0.1111313591 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
20 Hb_001711_030 0.1119907267 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]

Gene co-expression network

sample Hb_002749_100 Hb_002749_100 Hb_084849_020 Hb_084849_020 Hb_002749_100--Hb_084849_020 Hb_000362_210 Hb_000362_210 Hb_002749_100--Hb_000362_210 Hb_007047_010 Hb_007047_010 Hb_002749_100--Hb_007047_010 Hb_011161_040 Hb_011161_040 Hb_002749_100--Hb_011161_040 Hb_002660_160 Hb_002660_160 Hb_002749_100--Hb_002660_160 Hb_001133_020 Hb_001133_020 Hb_002749_100--Hb_001133_020 Hb_001369_050 Hb_001369_050 Hb_084849_020--Hb_001369_050 Hb_001718_100 Hb_001718_100 Hb_084849_020--Hb_001718_100 Hb_005686_110 Hb_005686_110 Hb_084849_020--Hb_005686_110 Hb_003050_230 Hb_003050_230 Hb_084849_020--Hb_003050_230 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_084849_020--Hb_000362_210 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_010172_030 Hb_010172_030 Hb_000362_210--Hb_010172_030 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050 Hb_002026_190 Hb_002026_190 Hb_007047_010--Hb_002026_190 Hb_007047_010--Hb_002660_160 Hb_002326_030 Hb_002326_030 Hb_007047_010--Hb_002326_030 Hb_007047_010--Hb_007021_020 Hb_002352_010 Hb_002352_010 Hb_007047_010--Hb_002352_010 Hb_004453_150 Hb_004453_150 Hb_011161_040--Hb_004453_150 Hb_011139_020 Hb_011139_020 Hb_011161_040--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_011161_040--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_011161_040--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_011161_040--Hb_000152_430 Hb_011161_040--Hb_001133_020 Hb_002660_160--Hb_007021_020 Hb_002660_160--Hb_010172_030 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_018133_060 Hb_018133_060 Hb_001133_020--Hb_018133_060 Hb_000086_070 Hb_000086_070 Hb_001133_020--Hb_000086_070 Hb_023226_010 Hb_023226_010 Hb_001133_020--Hb_023226_010 Hb_000087_020 Hb_000087_020 Hb_001133_020--Hb_000087_020 Hb_001133_020--Hb_084849_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.9825 5.93874 17.3043 24.749 42.3439 92.1217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.158 106.196 88.4045 8.88205 14.3509

CAGE analysis