Hb_002750_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2750: 1912-3265
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18490g
description WRKY transcription factor 15 family protein
nr
ID XP_006383530.1
description WRKY transcription factor 15 family protein [Populus trichocarpa]
swissprot
ID Q9STX0
description Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=2 SV=1
trembl
ID U5GIR0
description WRKY transcription factor 15 family protein OS=Populus trichocarpa GN=POPTR_0005s18490g PE=4 SV=1
Gene Ontology
ID GO:0003677
description wrky transcription factor 15 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002750_010 0.0 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
2 Hb_003987_030 0.1166187673 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
3 Hb_000236_050 0.1229421654 - - phosphate transporter [Manihot esculenta]
4 Hb_002551_090 0.1269968618 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
5 Hb_008695_130 0.1311432216 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000934_290 0.1337949534 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009581_050 0.13427626 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
8 Hb_000335_050 0.1365239328 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
9 Hb_003788_010 0.1405084717 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
10 Hb_055305_010 0.1412939916 - - Disease resistance protein RFL1, putative [Ricinus communis]
11 Hb_001454_410 0.1444568125 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
12 Hb_003807_020 0.1463244434 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
13 Hb_003453_030 0.1474426684 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
14 Hb_000407_080 0.1474934442 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
15 Hb_001158_080 0.1480456445 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
16 Hb_039496_010 0.1487314363 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_012807_060 0.1513706074 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_005237_040 0.152078122 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
19 Hb_000029_370 0.1522417835 - - multidrug resistance pump, putative [Ricinus communis]
20 Hb_094637_010 0.1523610946 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]

Gene co-expression network

sample Hb_002750_010 Hb_002750_010 Hb_003987_030 Hb_003987_030 Hb_002750_010--Hb_003987_030 Hb_000236_050 Hb_000236_050 Hb_002750_010--Hb_000236_050 Hb_002551_090 Hb_002551_090 Hb_002750_010--Hb_002551_090 Hb_008695_130 Hb_008695_130 Hb_002750_010--Hb_008695_130 Hb_000934_290 Hb_000934_290 Hb_002750_010--Hb_000934_290 Hb_009581_050 Hb_009581_050 Hb_002750_010--Hb_009581_050 Hb_003987_030--Hb_000236_050 Hb_003987_030--Hb_008695_130 Hb_000034_030 Hb_000034_030 Hb_003987_030--Hb_000034_030 Hb_006711_020 Hb_006711_020 Hb_003987_030--Hb_006711_020 Hb_005237_040 Hb_005237_040 Hb_003987_030--Hb_005237_040 Hb_000236_050--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_000236_050--Hb_009785_010 Hb_014037_010 Hb_014037_010 Hb_000236_050--Hb_014037_010 Hb_004884_200 Hb_004884_200 Hb_000236_050--Hb_004884_200 Hb_005211_090 Hb_005211_090 Hb_000236_050--Hb_005211_090 Hb_002391_350 Hb_002391_350 Hb_000236_050--Hb_002391_350 Hb_012807_060 Hb_012807_060 Hb_002551_090--Hb_012807_060 Hb_001158_080 Hb_001158_080 Hb_002551_090--Hb_001158_080 Hb_002551_090--Hb_000934_290 Hb_008140_060 Hb_008140_060 Hb_002551_090--Hb_008140_060 Hb_003052_120 Hb_003052_120 Hb_002551_090--Hb_003052_120 Hb_022501_020 Hb_022501_020 Hb_002551_090--Hb_022501_020 Hb_001221_480 Hb_001221_480 Hb_008695_130--Hb_001221_480 Hb_001454_410 Hb_001454_410 Hb_008695_130--Hb_001454_410 Hb_003807_020 Hb_003807_020 Hb_008695_130--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_008695_130--Hb_000335_050 Hb_000934_290--Hb_008140_060 Hb_003788_010 Hb_003788_010 Hb_000934_290--Hb_003788_010 Hb_039496_010 Hb_039496_010 Hb_000934_290--Hb_039496_010 Hb_000934_290--Hb_001158_080 Hb_003787_060 Hb_003787_060 Hb_000934_290--Hb_003787_060 Hb_094637_010 Hb_094637_010 Hb_000934_290--Hb_094637_010 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_009581_050--Hb_012807_060 Hb_002007_140 Hb_002007_140 Hb_009581_050--Hb_002007_140 Hb_009581_050--Hb_003807_020 Hb_009581_050--Hb_000335_050 Hb_003430_020 Hb_003430_020 Hb_009581_050--Hb_003430_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 22.3075 4.78351 18.0091 0 0.0864076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172918 2.44774 0.414156 40.6494 4.50811

CAGE analysis